Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00101 ATGGAGGGTCCAAGTGAAGCTGCAGAGGGATCTTCTCAGAAGAGAACTGGAAGAGGCAAGATTGAAATCAAAAGGATTGAAAACACAACAAACAGACAAGTGACTTTCTGTAAGCGCCGGAATGGTTTGCTCAAGAAAGCTTACGAGTTGTCTGTCTTATGTGATGCTGAAGTTGCTCTCATCATCTTCTCAAGCCGTGGTCGTCTCTACGAGTATGCTAACAACAGTGTTAGAGGAACCATTGACAAGTATAAGAAAGCAAGCGCCGGCTCTTCATACCCTGGTTCTATTGCTGAAGCAAATACACAGTTTTACCAGCAAGAATCTACCAAACTTAGAAGACAGATTAGAGAGACTCAGAATTTAAACAGGCACATACTAGGTGAAGGTCTTAGCACCTTGAGCTTTAAGGAACTGAAGAATCTCGAGGGAAGGCTAGAGAAAGGCATCAGCAGGGTTAGAGCCAAAAAGAATGAGGCATTGTTTGCAGAGATCGAGTACATGCAGAAAAGGGAAATGGAGCTGCAAAACCACAACAATTTTCTTCGAGCAAAGATAGCTGAAAATGAGAGAGCAGAACAGCAGCAGCAATCAACTTCCATGCCAGGCAATGTGTATCAGCCAATACCTTCACAAGAACAAGCATATGACAGGAATTACATACCAGTCAATCTGCTTGAATCTAATCATCATCAGTACTCACTGCAAGATCAAACTGCTTTGCAGTTCGTGTAA 735 0.4272 MEGPSEAAEGSSQKRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLYEYANNSVRGTIDKYKKASAGSSYPGSIAEANTQFYQQESTKLRRQIRETQNLNRHILGEGLSTLSFKELKNLEGRLEKGISRVRAKKNEALFAEIEYMQKREMELQNHNNFLRAKIAENERAEQQQQSTSMPGNVYQPIPSQEQAYDRNYIPVNLLESNHHQYSLQDQTALQFV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00101 244 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte8g00101 244 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pte8g00101 244 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
Pte8g00101 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Pte8g00101 244 Coils Coil 175 195 - -
Pte8g00101 244 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pte8g00101 244 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pte8g00101 244 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pte8g00101 244 MobiDBLite consensus disorder prediction 1 21 - -
Pte8g00101 244 Coils Coil 139 159 - -
Pte8g00101 244 Pfam K-box region 101 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte8g00101 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 189 - -
Pte8g00101 244 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pte8g00101 244 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Pte8g00101 244 Gene3D - 29 90 IPR036879 GO:0003677|GO:0046983
Pte8g00101 244 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Pte8g00101 244 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00101 Pte-Chr8 1990752 1998448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00101 1 245 MADS-box Gene Family AT3G58780 70.000 6.01e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte8g00101 K-box 7.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00101 K09264 - gmx:100782733 365.54