Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00075 ATGATGCAGCAACCAGCACCAGGTGTCTTTCCACCACCGATGCAGGCTATGCATGCGGATCAGCAGAACCAGCAATACCAGCAGCAGCAAGCATGGATGATACAGCAACAATCGCATCCGGTTCCACCTCCAGTTGGATGGAATCCACAACCTGTACCACCGCCTCAGCTTTCTCAAGTCTATGCTCAGCCAACACAACAGTATTCGGCTGCGGTTGCTCCTGATGCTGGCAACCACGAAATCCGGTCTCTTTGGATCGGTGATTTGCAACCTTGGATGGACGAGAGTTATCTAATGAACTGTTTTGCATTGACTGGAGAGGTTGTTGCAGTGAAGGTGATTCGCAACAAGCAAACAGGCATGCCAGAGGGATATGGATTCCTTGAATTTGTTTCTCGTGCTGCTGCAGAAAGAATCTTGCAAACCTATAATGGTGCTTTAATGCCAAACGTGGAGCAAACTTTCAGGTTGAATTGGGCCACACTTAGTGCTGGTGAGCGACGGCAAGATGATGCTCCAGATTATACGATTTTTGTTGGTGATTTAGCTGCTGATGTTCTTGACTATACCCTCCAAGAAACTTTCAAAATGCACTATAAATCAGTGAAAGGTGCGAAGGTAGTCACTGATAGGACTACTGGACGTTCGAAGGGTTATGGGTTTGTGAGGTTTGGTGATGAAAACGAGCAACTGCGCGCAATGACTGAGATGAATGGCGTATATTGTTCATCTAGGCCCATGCGCATAGGACCTGCTGCTAGCAAAAAAACAACTGCTGTGCAGCAATATCAGCAAGCTACTTACCCAAATGCTCAGGGGAGTCAAGGCGAGAATGACCCTAATAATACAACTATATTTGTTGGAAATCTAGACCCAAGCATTACAGATGATATGTTGAGATCATTGTTTGGTCAGTATGGTGATCTAGTTCATGTGAAAATACCAGTAGGAAAACGATGTGGTTTTGTCCAGTTTGCTTACAGAGCTAGTGCTGAACAAGCATTATCAATGTTGAATGGTAGTCAGTTAGTAGGTCAAAGCATACGACTTTCATGGGGGCGCAGCCCTGCAAACAAACAGGGTGCTGAGCAGGCTCAATGGAGTAATGCATATTATCCTTATGGACAAGGATATGATCCTAATTCATACGCTCCTCCCACACAAGATCCAAACATGTACTATGGAGGTTATCCTGGTTATGGTGGTTACCAGCAGACTGGTGCATACCAACAGCCACAGCAGTGA 1245 0.457 MMQQPAPGVFPPPMQAMHADQQNQQYQQQQAWMIQQQSHPVPPPVGWNPQPVPPPQLSQVYAQPTQQYSAAVAPDAGNHEIRSLWIGDLQPWMDESYLMNCFALTGEVVAVKVIRNKQTGMPEGYGFLEFVSRAAAERILQTYNGALMPNVEQTFRLNWATLSAGERRQDDAPDYTIFVGDLAADVLDYTLQETFKMHYKSVKGAKVVTDRTTGRSKGYGFVRFGDENEQLRAMTEMNGVYCSSRPMRIGPAASKKTTAVQQYQQATYPNAQGSQGENDPNNTTIFVGNLDPSITDDMLRSLFGQYGDLVHVKIPVGKRCGFVQFAYRASAEQALSMLNGSQLVGQSIRLSWGRSPANKQGAEQAQWSNAYYPYGQGYDPNSYAPPTQDPNMYYGGYPGYGGYQQTGAYQQPQQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00075 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 67 364 - -
Pte8g00075 414 SMART rrm1_1 284 351 IPR000504 GO:0003723
Pte8g00075 414 SMART rrm1_1 176 250 IPR000504 GO:0003723
Pte8g00075 414 SMART rrm1_1 83 158 IPR000504 GO:0003723
Pte8g00075 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 254 IPR000504 GO:0003723
Pte8g00075 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 246 IPR000504 GO:0003723
Pte8g00075 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 149 IPR000504 GO:0003723
Pte8g00075 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 348 IPR000504 GO:0003723
Pte8g00075 414 FunFam Polyadenylate-binding protein RBP45C 165 259 - -
Pte8g00075 414 SUPERFAMILY RNA-binding domain, RBD 262 380 IPR035979 GO:0003676
Pte8g00075 414 Gene3D - 81 161 IPR012677 -
Pte8g00075 414 FunFam Polyadenylate-binding protein RBP47B 81 161 - -
Pte8g00075 414 FunFam polyadenylate-binding protein RBP45 266 363 - -
Pte8g00075 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 355 IPR000504 GO:0003723
Pte8g00075 414 CDD RRM1_SECp43_like 83 161 - -
Pte8g00075 414 Gene3D - 162 257 IPR012677 -
Pte8g00075 414 Gene3D - 258 370 IPR012677 -
Pte8g00075 414 SUPERFAMILY RNA-binding domain, RBD 81 256 IPR035979 GO:0003676
Pte8g00075 414 MobiDBLite consensus disorder prediction 1 23 - -
Pte8g00075 414 CDD RRM2_SECp43_like 174 253 - -
Pte8g00075 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00075 Pte-Chr8 1549157 1553715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00075 81 401 Eukaryotic Initiation Factors Gene Family AT2G23350 26.444 2.22e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00075 - - qsa:O6P43_013731 544.273