Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00038 ATGAAGAGAGGAAGAGGCGCGGTGGCTCTGAAAGCAGTTGCCCCGGTTGAGCTAAACGGATCGGGTCCGGCAACGATGTGTAAAGAGCCAAGATACAGAGGCGTGAGAAAGAGACCATGGGGAAGGTTTGCTGCCGAGATTAGAGACCCCTGGAAGAAAGCCCGTGTTTGGCTGGGCACCTTTGACTCAGCGGAAGAAGCGGCACGAGCATATGACGCGGCCGCCATAAACCTCCGTGGGCCTAAAGCCAAGACTAATTTTCCGGTGGCACCTTCTGCTTTTGGCTACCATAACAACAATAATCACAACAACCCGAATGATCCGTTTCTGGATCAGAGATTCTACGCCACCAATGGCTTCCAAGAGCCGCCCGTGGATCCTCAGAGACCTGCATCAAGCAGCTTGAGCAGCACCGTTGAGTCGTTCAGTGGGCCAAGGCCACCGTCGTCAACAGTTCCGGTAGTCCCTGCAAGGTTGTACCCCCGGACTCCGCCACTTGTGCCGGAGGATTGTCACAGTGATTGTGATTCGTCATCGTCGGTGATCGATGACGAGAGCGATAACATTGTGTCATCATCGTTTCGCAAAAACGCGTTGCCGTTTGATCTCAACTTTCCCCCGTCGGATGAGGTGGACTACAGTGATAATCTACTCTGCAGTACTGCCCTTTGCCTCTGA 678 0.5369 MKRGRGAVALKAVAPVELNGSGPATMCKEPRYRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDAAAINLRGPKAKTNFPVAPSAFGYHNNNNHNNPNDPFLDQRFYATNGFQEPPVDPQRPASSSLSSTVESFSGPRPPSSTVPVVPARLYPRTPPLVPEDCHSDCDSSSSVIDDESDNIVSSSFRKNALPFDLNFPPSDEVDYSDNLLCSTALCL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00038 225 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Pte8g00038 225 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Pte8g00038 225 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Pte8g00038 225 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Pte8g00038 225 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Pte8g00038 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 204 - -
Pte8g00038 225 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Pte8g00038 225 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Pte8g00038 225 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Pte8g00038 225 MobiDBLite consensus disorder prediction 118 157 - -
Pte8g00038 225 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Pte8g00038 225 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00038 Pte-Chr8 915741 918197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00038 1 220 AP2-EREBP Transcription Factor Family AT1G50640 60.000 2.28e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte8g00038 AP2 4.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00038 K09286 - zju:107432807 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00038 8 915741 918197 Pte8g00038 8 915741 918197 RCT