Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00028 ATGGCCGAAGGTAGCACTACAGCAAAGGAAACGGCAGATGCTCCCCGCGTGGAAGCGACGGAGAGTTCTGAGAAGGGGCCCGTGGAAAATGGTGAAGGTGAGGAACCAATCAATAAGAAGGCGAAGGTGGAGGATAGGGTGACTAGTGGAGATGGATTGAAGAGAGTGGCGGAGATTGTTTTGGTGTTGTCGAAAATGGCGGCGATGAGAGGTGGGAGAAGTCCGACTGTTGTGGAGGCTAAGTTGATGGTTGAGGCGAGGGATAAGTTGGTGGATGTGTGTGCAAGGTTGGCGCCGAAGGAAATTGTGGCAAGGGAAACTATTGCGACTATAATTGAGGATTTGGGATTGAATGCCAAGATTAACGATCAGAGATCAGGGAATAGGATTCCCAAGTTGACTATTGCTGAGAGGTTGTCCTTGTCTATGAAGAAGATGGAAGAAAAGAGAAAATTTCTACCACATCAACCTTTGCAAACAGGCTTTACTCAACCAGTTGATGGGCATGGCCATACGGTTTGTATTTCATCTGATAAATCAGGCCAAATTCCAGTATCTTCTGTGGGAATTTCAGCTTCCACTCCTGTAATTCACGTTTCTGCAACAACTACTATGCCTTTCCAGTATCAAACACCTACCAATGAGGTGAAGACACAGATGGTTCCTACTACGATGCCTAACATTCATTTGGGAAGAGATTTCTCTTCCTTAACACCAATGAGATTGGAAAGACCAGTGTTCAAAGTTGAGGGAAGGGCAACTGGGTCTTTCACTGTGCAAACGCCAGCAAATTCTTCTGCTAACCAGCCATTTGTCAATGCTCCAATGTGGTCTGTACATACTCAGTCGGCCTTTTCAGGAAGAAGTGGACCAGAGAATAAGGTGACTAGTCATGCCCCTGTCAAATTTGAGGGAACAGGTGATGGGACTGCATCAAAGATGACAACACAAGTAGCACGAGATCAGAACTTCAAACCTTTTATTACCCAGACAGCTTCTGGAAATATATCTAGCATGCATCAGCCTGTACAGGGCACTAACACCGTTCAAGCTCCTATACATCGTAGCAATCACACAGAAATTTCTAGGGTTATCCAGAGATTGTTACAACCTAAGGTTCCTGATCAACCCACATGGACTCCTCCGTCAAGGGATTACATGAATAAGGCTTTGACTTGCCAATTTTGTAATTTGGCTGTCAATGAGGTGGATAATGTGCTTATTTGTGATAATTGTGAAAAGGGATTTCACTTAATGTGTCTACCCCCACCTGGTGTGAGAGGAGCTCCCAGAGGTGAGTGGCATTGCACGGCGTGCTTGAGGAAAAGCAATGGGAAGCCTCTACCTCCAAAATATGGTCGTGTCATGCGGTCGACAATGCCCCCAAACGCTCCACAGAAAGAGGCAACTAATCTTGATGGAATCCAACATTCTCCAGAGAAGAAGCCAAGCATGTCAGATCCAAATGTCAATCTACAACATATAACAACAGATGGAGGTGCTCCTTTGAATTCTTCTGCGTCCAATTGTGCTCATGATGTTGCAAATTCTAAGCCCCCAGAGAATGAACAGAGGTCTGTGACAAACTTAGAGGTTTCTGAATCAAAGAGTACACACAAGAAGTCTGATGCTTTACAACCTTGCACTTTACAAACTGTTGATAACAATGACAATAACACAAATGACTCACAGAGAAGGGAAAACAATCGAGCAGACTTAGAGGCTACAGAATTGGAGAGAAGTTACAGGGAGTCTGATGCCATACAATCCTCTCACACTTTACAAGTTGTTGATGGGAAGCAGGTTGAATGGGTTGGTGATGTTATACATGTTGAGGTTTGCTCTCGTTCATCCCTTGTCCCTTTACCCTTGTCACCTGTCCCTTGCATGTCGAATGGCAAAGAATTGTCTGAACATTTCCACGTGGGTTCGACAAGTAGGGGTGAAGCATTGTCTGATGAAGCGAAGAATGCCGAATTCATGGTTAACCCTTACTGTCTGCAATATTTTTACATTTCTCTACCTGATTCGATGCATGTTGAAATGGATGTTGTAGTTTTTAAGAACATCATATTTGATGGAGCTGTTATTTCTTGCAATTGTGCGACTTTAGGCTACTGGTTTTGGGTTGGAATAGCCAGTGACAGAGCTGGGCTTCACCGAGCTGGGCTTCGCGGAGCTGCTGATGGCGGAGCTCCGACAGTGACAGAGCTGGGCTTCACGGAACTGGACTTCACGGATCTGGGCTTCACGGATCTGGGCTTCACGGATATGGGCTTCACAGAGCTGGGCTTCACGGAGATGGACTTCACCGAGCTAGGCTTCACGGAGATGGGCTTCACCGAGCTGGGCTTCACTGAGATGGGCTTCACCCACCTGGGCTCTGATCTGGTCCTGCGATGTAGTGGCGAGATGAGCAGTGACAGCGCTGGAGAGGCTCGATCAGTCTGTGATAGAGCTGCAGTGGCAAGGATGGAGCTCGGTTTGAAAAGGCAGAGGGAAAGGGGAGGAGACGCGAAATGA 2523 0.4653 MAEGSTTAKETADAPRVEATESSEKGPVENGEGEEPINKKAKVEDRVTSGDGLKRVAEIVLVLSKMAAMRGGRSPTVVEAKLMVEARDKLVDVCARLAPKEIVARETIATIIEDLGLNAKINDQRSGNRIPKLTIAERLSLSMKKMEEKRKFLPHQPLQTGFTQPVDGHGHTVCISSDKSGQIPVSSVGISASTPVIHVSATTTMPFQYQTPTNEVKTQMVPTTMPNIHLGRDFSSLTPMRLERPVFKVEGRATGSFTVQTPANSSANQPFVNAPMWSVHTQSAFSGRSGPENKVTSHAPVKFEGTGDGTASKMTTQVARDQNFKPFITQTASGNISSMHQPVQGTNTVQAPIHRSNHTEISRVIQRLLQPKVPDQPTWTPPSRDYMNKALTCQFCNLAVNEVDNVLICDNCEKGFHLMCLPPPGVRGAPRGEWHCTACLRKSNGKPLPPKYGRVMRSTMPPNAPQKEATNLDGIQHSPEKKPSMSDPNVNLQHITTDGGAPLNSSASNCAHDVANSKPPENEQRSVTNLEVSESKSTHKKSDALQPCTLQTVDNNDNNTNDSQRRENNRADLEATELERSYRESDAIQSSHTLQVVDGKQVEWVGDVIHVEVCSRSSLVPLPLSPVPCMSNGKELSEHFHVGSTSRGEALSDEAKNAEFMVNPYCLQYFYISLPDSMHVEMDVVVFKNIIFDGAVISCNCATLGYWFWVGIASDRAGLHRAGLRGAADGGAPTVTELGFTELDFTDLGFTDLGFTDMGFTELGFTEMDFTELGFTEMGFTELGFTEMGFTHLGSDLVLRCSGEMSSDSAGEARSVCDRAAVARMELGLKRQRERGGDAK* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00028 840 ProSitePatterns Zinc finger PHD-type signature. 393 439 IPR019786 -
Pte8g00028 840 MobiDBLite consensus disorder prediction 449 575 - -
Pte8g00028 840 SUPERFAMILY FYVE/PHD zinc finger 383 450 IPR011011 -
Pte8g00028 840 Coils Coil 561 581 - -
Pte8g00028 840 SMART PHD_3 392 440 IPR001965 -
Pte8g00028 840 MobiDBLite consensus disorder prediction 1 46 - -
Pte8g00028 840 ProSiteProfiles Zinc finger PHD-type profile. 390 442 IPR019787 -
Pte8g00028 840 MobiDBLite consensus disorder prediction 482 533 - -
Pte8g00028 840 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 603 - -
Pte8g00028 840 MobiDBLite consensus disorder prediction 560 575 - -
Pte8g00028 840 MobiDBLite consensus disorder prediction 542 559 - -
Pte8g00028 840 Pfam PHD-finger 393 441 IPR019787 -
Pte8g00028 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 448 IPR013083 -
Pte8g00028 840 MobiDBLite consensus disorder prediction 14 46 - -
Pte8g00028 840 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00028 Pte-Chr8 833205 842176 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00028 396 460 Core DNA Replication Machinery Family AT4G12620 37.333 1.91e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte8g00028 PHD 3.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00028 - - qsa:O6P43_013635 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00028 8 833205 842176 Pte8g00028 8 833205 842176 RCT