Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00023 ATGGCCGAAGGTAGCACTACAGCAAAGGAAACGGCAGATGCTCCCCGCGTGGAAGCGACGGAGAGTTCTGAGAAGGGGCCCGTGGAAAATGGTGAAGGTGAGGAACCAATCAATAAGAAGGCGAAGGTGGAGGATAGGGTGACTAGTGGAGATGGATTGAAGAGAGTGGCGGAGATTGTTTTGGTGTTGTCGAAAATGGCGGCGATGAGAGGTGGGAGAAGTCCGACTGTTGTGGAGGCTAAGTTGATGGTTGAGGCGAGGGATAAGTTGGTGGATGTGTGTGCAAGGTTGGCGCCGAAGGAAATTGTGGCAAGGGAAACTATTGCGACTATAATTGAGGATTTGGGATTGAGTGCCAAGATTAACGATCAGAGATCAGGGAATAGGATTCCCAAGTTGACTATTGCTGAGAGGTTGTCCTTGTCTATGAAGAAGATGGAAGAAAAGAGAAAATTTCTACCACATCAACCTTTGCAAACAGGCTTTACTCAACCAGTTGATGGGCATGGCCATACGGTTTGTATTTCATCTGATAAATCAGGCCAAATTCCAGTATCTTCTGTGGGAATTTCAGCTTCCACTCCTGTAATTCACGTTTCTGCAACAACTACTACGCCTTTCCAGTATCAAACACCTACCAATGAGGTGAAGACACAGATGGTTCCTACTACGATGCCTAACATTCATTTGGGAAGAGATTTCTCTTCCTTAACACCAATGAGATTGGAAAGACCAGTGTTCAAAGTTGAGGGAAGGGCAACTGGGTCTTTCACTGTGCAAACGCCAGCAAATTCTTCTGCTAACCAGCCATTTGTCAATGCTCCAATGTGGTCTGTACATACTCAGTCGGCCTTTTCAGGAAGAAGTGGACCAGAGAATAAGGTGACTAGTCATGCCCCTGTCAAATTTGAGGGAACAGGTGATGGGACTGCATCAAAGATGACAACACAAGTAGCACGAGATCAGAACTTCAAACCTTTTATTACCCAGACAGCTTGTGGAAATATATCTAGCATGCATCAGCCTGTACAGGGTACTAACACCGTTCAAACTCCTATACATCGTAGCAATCACACAGAAATTTCTAGGGTTATCCAGAGATTGTTACAACCTAAGGTTCCTGATCAACCCACATGGACTCCTCCGTCAAGGGATTACATGAATAAGGCTTTGACTTGCCAATTTTGTAATTTGGCTGTCCATGAGGTGGATAATGTGCTTATTTGTGATAATTGTGAAAAGGGATTTCACTTAATGTGTCTACCCCCACCTGGTGTGAGAGGAGCTCCCAGAGGTGAGTGGCATTGCACGGCGTGCTTGAGGAAAAGCAATGGGAAGCCTCTACCTCCAAAATATGGTCGTGTCATGCGGTCGACAATGCCCCCAAACGCTCCACAGAAAGAGGCAACTAATCTTGATGGAATCCAACATTCTCCAGAGAAGAAGCCAAGCATGTCAGATCCAAATGTCAATCTACAACATATAACAACAGATGGAGGTGCTCTTTTGAATTCTTCTGCCTCAGCTGCTGTAGTTTCTTTGGGTGTAGATTGTGCTCATGATGTTGCAAATTCTAAGCCCCCAGAGAATGAACAGAGGTCTGTGACAAACTTAGAGGTTTCTGAATCAAAGAGCACACACAAGAAGTCTGATGCTTTACAACCTTGCACTTTACAAACTGTTGGTCAGACAGAGCTGCCCAATATTTCTTCCATTTCTTCAGATAACAATGAGAATGGGTTGAATGACAATAACACAAATGACTCACAGAGAAGGGAAAACAATCGAACAGACTTAGAGGCTACAGAATTGGAGAGAAGTTACAGGGAGTCTGATGCCATACAATCCTCTCACACTTTACAAGTTGTTGGTCAGTCAGGGTCCCCTAATAATTGCGAAGTTCCTTCCAATAACATCGAGATTGAAAAGGATCGGGATAGCCAAGATGTTGCACTAGCCAATATAAATGAAAATTCTGGAAGTAGTAATGTTGAATCTAAGCAATTGCCCCGCGTTGCTTCAGATGGGAAGCAGGTTGAATGGGTTGGTGATGTTATACAAGTTGAGGGTGAGAAAAAAAAACAAAACCGCGAGGCCCTTCTCATTTCGCGTCTCCTCCCCTTTCCCTCTGCCTTTTCAAACCGAGCTCCATCCTCGCCACTGCAGCTCTATCACAGACTGAGCCTCTCCAGTGCTGTCACTGCTCATCTCGCCATTACATCGCAGGACCAGATCAGAGCCCAGGTGGGTGAAGCCCGTTTCTCACTGACCGAGGTGTCCCAGATGTCGAATGTCAAAGAATTATCTGAACATTTCCACGTGGGTTCGACAAGTAGGGGTGAAGCATTGTCTGATGAAGCGAAGAATGCCGAATTCATGGCCAAGTTTAGGAGAAACCTTGCTTATCGATTGGAGATGCCGGATGAAAGTCATCTGATACCGCAGCAATGCAAATGTAATCCTCCTTTAAAGGCTGTTATTTCTGTATGTTGGGATGATAAAAACAGAGGTAGCAGGGTTCTTAAGTGTCCAGCGAAAAATGGTAAAGGATGTGGGTATGATGTTCTAGTTGATTGGCCTCTGACTGGTCGGGCAAAATACGTCACTGATTTTCTATATGACACTGTCATTCAACTTGTTATGGAAAACACATTGGCACGTGAAACATGGCTTAAGCGCGCCAATGAGGGCAAACCAGAACAAGAATTTGTCTATGATGAAGTTTTAGGGTAA 2733 0.449 MAEGSTTAKETADAPRVEATESSEKGPVENGEGEEPINKKAKVEDRVTSGDGLKRVAEIVLVLSKMAAMRGGRSPTVVEAKLMVEARDKLVDVCARLAPKEIVARETIATIIEDLGLSAKINDQRSGNRIPKLTIAERLSLSMKKMEEKRKFLPHQPLQTGFTQPVDGHGHTVCISSDKSGQIPVSSVGISASTPVIHVSATTTTPFQYQTPTNEVKTQMVPTTMPNIHLGRDFSSLTPMRLERPVFKVEGRATGSFTVQTPANSSANQPFVNAPMWSVHTQSAFSGRSGPENKVTSHAPVKFEGTGDGTASKMTTQVARDQNFKPFITQTACGNISSMHQPVQGTNTVQTPIHRSNHTEISRVIQRLLQPKVPDQPTWTPPSRDYMNKALTCQFCNLAVHEVDNVLICDNCEKGFHLMCLPPPGVRGAPRGEWHCTACLRKSNGKPLPPKYGRVMRSTMPPNAPQKEATNLDGIQHSPEKKPSMSDPNVNLQHITTDGGALLNSSASAAVVSLGVDCAHDVANSKPPENEQRSVTNLEVSESKSTHKKSDALQPCTLQTVGQTELPNISSISSDNNENGLNDNNTNDSQRRENNRTDLEATELERSYRESDAIQSSHTLQVVGQSGSPNNCEVPSNNIEIEKDRDSQDVALANINENSGSSNVESKQLPRVASDGKQVEWVGDVIQVEGEKKKQNREALLISRLLPFPSAFSNRAPSSPLQLYHRLSLSSAVTAHLAITSQDQIRAQVGEARFSLTEVSQMSNVKELSEHFHVGSTSRGEALSDEAKNAEFMAKFRRNLAYRLEMPDESHLIPQQCKCNPPLKAVISVCWDDKNRGSRVLKCPAKNGKGCGYDVLVDWPLTGRAKYVTDFLYDTVIQLVMENTLARETWLKRANEGKPEQEFVYDEVLG* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00023 910 SMART PHD_3 392 440 IPR001965 -
Pte8g00023 910 ProSitePatterns Zinc finger PHD-type signature. 393 439 IPR019786 -
Pte8g00023 910 MobiDBLite consensus disorder prediction 550 588 - -
Pte8g00023 910 MobiDBLite consensus disorder prediction 1 46 - -
Pte8g00023 910 SUPERFAMILY FYVE/PHD zinc finger 383 450 IPR011011 -
Pte8g00023 910 MobiDBLite consensus disorder prediction 458 493 - -
Pte8g00023 910 CDD PHD_SF 392 439 - -
Pte8g00023 910 MobiDBLite consensus disorder prediction 589 612 - -
Pte8g00023 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 457 IPR013083 -
Pte8g00023 910 MobiDBLite consensus disorder prediction 523 614 - -
Pte8g00023 910 Pfam PHD-finger 393 441 IPR019787 -
Pte8g00023 910 ProSiteProfiles Zinc finger PHD-type profile. 390 442 IPR019787 -
Pte8g00023 910 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 693 - -
Pte8g00023 910 MobiDBLite consensus disorder prediction 14 46 - -
Pte8g00023 910 Coils Coil 587 607 - -
Pte8g00023 910 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00023 Pte-Chr8 652798 658552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00023 396 460 Core DNA Replication Machinery Family AT4G12620 37.333 1.90e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte8g00023 PHD 5.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00023 - - qsa:O6P43_013635 561.607