Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00014 ATGGAATCAGATCTTGGCAAACTCTTCATTGGTGGGATTTCATGGGACACGGATGAAGAACGTCTTAAAGAGTATTTTAGTAAATACGGAGAGGTGGTAGAAGCTGTGATCATGAGAGATCGTACAACTGGCCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATACTGCTGTTGCAGAAAGGGTCATCATGGACAAGCACATGATCGATGGCCGCACTGTGGAAGCAAAGAAAGCTGTTCCCAGAGATGATCAACACTCTTCAAACAAAAACATTTCTAGTGTTCAGGGTTCTCCTGGTCCCGGACGAACAAAAAAGATTTTCGTTGGAGGTTTACCATCAACTATAACAGAAAGTGACTTCAAGAAGTACTTTGATCAGTTTGGTACTATTAATGATGTTGTAGTAATGTATGATCACAACACCCAGAGGCCACGAGGATTTGGCTTCATTACATATGATTGTGAGGAAGCTGTTGATAGAGTTCTGTACAAAACATTTCATGAACTTAATGGAAAAATGGTAGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCAGGGCCTAGCCGGAGCCCTTTGGTAGGATATAACTATGGTTTGAATAGGGCAAGTAACTACTTAAACAGTTATGGTCGGGGTTATAATATGAGTCCAGTTGGAGGCTATGGGATGAGGATGGATGGTAGGTTCAATTCCATTGCTAGCGGGCGAAGTGCCTTTTCCCCATTTGGCACTACAGGTTATGGAGTGGGTGTCAATTTGGAGGCCGGATTGAACCCAAGTTATGGTGGGACTTCCAATTTTGGGAGTAATCTAGGGTATGGTCGGATGTTCAGTCCTTTCTACAATGGCAATTCAGGCAGGTACACTCCGATTGGTTATAATGGGGGAAATGAAAGACGCGATTCTCTTTTAAACTCAACTTCCAGAACTGTCTGGGGAAATGCTGGCCTGAACAATGCCAATAGTCCAGCCAGCCCTGGATCTTACTTGGGATCGGGAAGTGGAGGCTTTGGGTTTTCTATTGGCAATACTGGAGCAAATTGGGTGCCTTCTATTCCAACACAGGGTGGAATAGAAAGTGCCTCTGGTTATGGTGGTGGGAATACTCTTTATGGCAGTAGAGATGGCAACTTTAGCTTAGGAGGGGGTGGGTTTGGAAGAAGTAGTGGCGTGAGTGGAAACCCAACCTCTTCATTTGCTCCAACAACAGGTAGCTATGAAGGATCTTATGAAGATATATACCGCAGCGATTTGGTATATAATAACTCAACCTGGCGACCCACCACTCCTGAGCTTGATGGTTCTGATACATTTGATTATGGACTCGGTGGTATAACGGACGTCCCTGCCAAAAGTTCTGACGGTTATGTTGGAAATTACAATGTTACAAGTAGACAACCTAATAGAGCTTCAAAGGAGTGGCTCAACCGACAATAA 1446 0.4433 MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADTAVAERVIMDKHMIDGRTVEAKKAVPRDDQHSSNKNISSVQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDCEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLNRASNYLNSYGRGYNMSPVGGYGMRMDGRFNSIASGRSAFSPFGTTGYGVGVNLEAGLNPSYGGTSNFGSNLGYGRMFSPFYNGNSGRYTPIGYNGGNERRDSLLNSTSRTVWGNAGLNNANSPASPGSYLGSGSGGFGFSIGNTGANWVPSIPTQGGIESASGYGGGNTLYGSRDGNFSLGGGGFGRSSGVSGNPTSSFAPTTGSYEGSYEDIYRSDLVYNNSTWRPTTPELDGSDTFDYGLGGITDVPAKSSDGYVGNYNVTSRQPNRASKEWLNRQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00014 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte8g00014 481 Gene3D - 6 85 IPR012677 -
Pte8g00014 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pte8g00014 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pte8g00014 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pte8g00014 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte8g00014 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte8g00014 481 MobiDBLite consensus disorder prediction 77 105 - -
Pte8g00014 481 CDD RRM2_Hrp1p 107 184 - -
Pte8g00014 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pte8g00014 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte8g00014 481 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Pte8g00014 481 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pte8g00014 481 Gene3D - 86 194 IPR012677 -
Pte8g00014 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 472 - -
Pte8g00014 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pte8g00014 481 MobiDBLite consensus disorder prediction 87 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00014 Pte-Chr8 421695 425409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00014 8 176 Eukaryotic Initiation Factors Gene Family AT1G22760 27.624 1.92e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00014 K14411 - gmx:100794390 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00014 8 421695 425409 Pte8g00014 8 421695 425409 RCT