Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01289 ATGGCATCTTTTGGTTGTTGGTGCTACAGATGCAATCGATTTATTGCTGCTCGTGTTGATGGTCAACACTTGATTCTCTGTCCTGACTGTGGGTCTGGTTTTGTAGAAGAAATCAGAAGTCCGGCTCACTCACCGATCAATCGATTTCCTCTAGAGACAATGTACGGTGATAACGGCTTGGAATCGGATCGTGTTGGAAGTCCGAGATTGCTTCCGGGTCGAAGGAATGGTGGGGATCGGTCACCCTTTAACCCTGTGATTGTGCTCCGTGGGCCTTCTGATGGTGGCGGCGGAGGCGGAAATCAAAATGAAGCTGAAAGAGGGAACTTTGAGTTCTATTATGATGAGGGTACTGGTTCGGGTCTTCGGCCATTACCTCCTAGTGTTTCTGAATTCTTGATGGGCTCTGGGTTTGATCGGTTACTTGATCAGTTGGCTCAATTAGACGTCAATGGCTTTGGGAGGTTGGATCACAGGCCAGCCGCATCAAAGGCAGCGATTGAATCAATGCCTGTGATTAAAATTGTTGAGGCTCATGTTTCTTCTGAGTCACACTGTGCAGTTTGTAAAGAACCGTTTGAGCTTGATATGGAAGCTCGGGAAATGCCTTGTAAGCATATTTACCATTCCAATTGCATAATTCCTTGGCTTTCAATTCGGAACTCGTGTCCCGTGTGTCGTCACGAGTTACCTACTGATGTTAGAGGAGGTGGAAATAGTGCTAGTGGTGGAAGCTCTCCAGTTTCTGTTAGAGTTAGAGACGAGGATACTGTTGGATTGACTATATGGAGATTGCCTGGTGGTGGTTTCGCAGTAGGAAGGTTTACTGGCGGTAGACAAGCTGCTCTGCGTGAGCTTCCTGGTGTATTCACTGAAATGGATGGTGGGTTCAATACCAGTGGTGTGCCAAGAAGGAACTTATGGGATTTTAATGTAAGAAGATCAAGGGAAACTCATGGATTTGGTCGTGCATTCCGCAGTGTCATCTCATTTTTCGGGAGGCTAGGGACTTCGTCCTCTCGTTCTTCATCTAGGTTGGCGGAAAGAACAATGTCTAATACTGTATTCCATAGATCTTCGAGAAGGCGCAGGAGATCTTGGTTTATGGATAATGGATGGTGA 1122 0.4652 MASFGCWCYRCNRFIAARVDGQHLILCPDCGSGFVEEIRSPAHSPINRFPLETMYGDNGLESDRVGSPRLLPGRRNGGDRSPFNPVIVLRGPSDGGGGGGNQNEAERGNFEFYYDEGTGSGLRPLPPSVSEFLMGSGFDRLLDQLAQLDVNGFGRLDHRPAASKAAIESMPVIKIVEAHVSSESHCAVCKEPFELDMEAREMPCKHIYHSNCIIPWLSIRNSCPVCRHELPTDVRGGGNSASGGSSPVSVRVRDEDTVGLTIWRLPGGGFAVGRFTGGRQAALRELPGVFTEMDGGFNTSGVPRRNLWDFNVRRSRETHGFGRAFRSVISFFGRLGTSSSRSSSRLAERTMSNTVFHRSSRRRRRSWFMDNGW* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01289 373 MobiDBLite consensus disorder prediction 59 106 - -
Pte7g01289 373 SMART ring_2 186 226 IPR001841 -
Pte7g01289 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 233 IPR013083 -
Pte7g01289 373 FunFam E3 ubiquitin-protein ligase RING1-like 147 233 - -
Pte7g01289 373 Pfam Protein of unknown function (DUF1117) 258 360 IPR010543 -
Pte7g01289 373 CDD RING-H2_RNF126-like 186 227 - -
Pte7g01289 373 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Pte7g01289 373 SUPERFAMILY RING/U-box 166 233 - -
Pte7g01289 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 114 231 - -
Pte7g01289 373 Pfam Ring finger domain 185 227 IPR001841 -
Pte7g01289 373 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01289 Pte-Chr7 37193039 37195301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01289 124 233 C3H Transcription Factor Family AT5G01980 47.273 1.35e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01289 K11982 - qsa:O6P43_016745 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte7g01289 7 37193039 37195301 Pte7g01289 7 37193039 37195301 RCT