Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01271 ATGAGCCGTTACGATAGCCGCTCTGGCGACCCCAGTTCATATCGTGACCGGAGAAGTGAATCCGGGTTTGGGGCATCGACTGGTTATGGTGGTTCAGTACGTTCCTCGTCCACCAGGAAGGATTATGATGGTGCTGAGTCTCCCAGGAAGTTGGACTTAGATGGGTTGACTCCCTTTGAGAAAAACTTTTATCGTGAGACTCCAGAAACAGCGAGAATGTCAGAGGCAGAGGTTGAGGAGTATAGGCAGAAGAGGGGAATAACTATTGAGGGGCGAGATGTTCCAAAACCCATCAAGAGTTTTAAAGATGCTGGATTTCCAGATTATGTTATGCAAGAAATTGAAAAGGCTGGCTTTGTTGAACCTACTGCCATTCAGTCTCAAGGTTGGCCTATGGCTTTGAAAGGTCGTGATCTTATTGGTATTGCAGAAACAGGATCTGGCAAAACACTTGCTTATCTGTTACCTGCTATTGTGCATGTTAATGCTCAACCTTTCCTGGCCCCTGGTGACGGACCAATTGTTTTAGTTTTGGCACCAACTCGTGAACTTGCTGTACAAATACAACAAGAGGCTACCAAATTTGGAGCATCATCGAAAATTAAGAACACATGTATCTATGGAGGAGTTCCAAAAGGGCCGCAGGTGCGTGACCTCCAGAAAGGTGTTGAAATTGTAATTGCCACCCCGGGAAGATTGATTGATATGTTGGAATCAAACCATACAAATCTGCGGAGGGTTACATACTTGGTTTTGGATGAAGCTGATCGCATGCTGGATATGGGATTTGAGCCTCAAATACATAAAATTGTTTCTCAGATACGTCCAGACCGGCAAACTTTATACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAGCTCGCAAGAAGTTTCCTTTATAACCCATACAAAGTAACCATTGGTTCATCAGATTTAAAGGCTAATCATGCAATACGACAATATGTGAACATCGTTTCTGAAAACCAGAAGTATAATAAATTAGTGAAGTTGCTTGAGGACATTATGGATGGAAGCCGGATACTTGTATTTATGGATACGAAAAAGGGATGCGATCAGGTCACACGACAGCTCCGCATGGATGGTTGGCCCGCTCTTGCAATTCATGGGGATAAAAGTCAGGCGGAAAGGGATTGGGTACTGTCTGAGTTTAAATCTGGCAAAAGCCCTATTATGACTGCAACTGATGTTGCTGCTCGAGGGTTAGATGTGAAGGATGTGAAATATGTGATAAACTATGACTTTCCGGGATCTCTTGAGGATTATGTTCACCGCATAGGTCGTACTGGCAGAGCAGGGGCCAAAGGAACAGCATATACATTCTTCACAGCAGCTAATGCCAGATTTGCTAAAGAACTGATAGGTATACTTGAGGAAGCTGGACAAAAGGTCATTCAAGGTATCGCGATGTGGGAAGGAGTTATGGTGGTGGTCGCTCCTGGAGCTAATTGCTTTGTCACAGATGATGGTGGTCTTTTCTATATCACTAGCTGA 1512 0.4438 MSRYDSRSGDPSSYRDRRSESGFGASTGYGGSVRSSSTRKDYDGAESPRKLDLDGLTPFEKNFYRETPETARMSEAEVEEYRQKRGITIEGRDVPKPIKSFKDAGFPDYVMQEIEKAGFVEPTAIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQIHKIVSQIRPDRQTLYWSATWPKEVEQLARSFLYNPYKVTIGSSDLKANHAIRQYVNIVSENQKYNKLVKLLEDIMDGSRILVFMDTKKGCDQVTRQLRMDGWPALAIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVIQGIAMWEGVMVVVAPGANCFVTDDGGLFYITS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01271 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Pte7g01271 503 SMART helicmild6 358 439 IPR001650 -
Pte7g01271 503 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Pte7g01271 503 MobiDBLite consensus disorder prediction 1 17 - -
Pte7g01271 503 SMART ultradead3 118 321 IPR014001 -
Pte7g01271 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 472 - -
Pte7g01271 503 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
Pte7g01271 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 454 IPR027417 -
Pte7g01271 503 Gene3D - 61 305 IPR027417 -
Pte7g01271 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Pte7g01271 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Pte7g01271 503 CDD DEADc_DDX5_DDX17 110 306 - -
Pte7g01271 503 CDD SF2_C_DEAD 318 448 - -
Pte7g01271 503 MobiDBLite consensus disorder prediction 39 55 - -
Pte7g01271 503 Gene3D - 306 478 IPR027417 -
Pte7g01271 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 482 IPR001650 -
Pte7g01271 503 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Pte7g01271 503 MobiDBLite consensus disorder prediction 1 55 - -
Pte7g01271 503 FunFam ATP-dependent RNA helicase RhlB 309 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01271 Pte-Chr7 37046859 37052324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01271 87 459 Eukaryotic Initiation Factors Gene Family AT3G19760 34.400 2.65e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01271 K12823 - mof:131164910 859.366