Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01260 ATGATGAAAGATGTCAGATTACTGCAGCAGCAGCAGTTAGTAGAAGAGAACATGTCTAACTTGACTTCAGCTTCTTGTGAAGCAAGTGCTTCCTCAGGAAACAAGACCGAAGTTGGTACAAGCACTAATTATCCTCAACAGTACTTAACTTCATCACAAACTCAAACACAATCTGTGAAGAAGAAAAGAAGCCTTCCTGGGAACCCAGATCCTGATGCCGAGGTAATCGCTTTGTCACCTAAGACTCTTTTGGCGACCAATAGGTTTATATGTGAGATCTGCAACAAAGGATTTCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTTCCATGGAAACTGAAGCAAAGAACAAGCAAAGAGATAAGGAAGAAGGTGTATGTGTGCCCAGAACCAACTTGTGTACATCATGATCCATCAAGAGCTCTAGGTGACTTAACTGGGATCAAGAAACACTTTTGCAGAAAGCATTGGGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGCAATCACTACAAATCCTTTGCTTCCTTGTCAACCATCAGGATCTTCAGCATCACACATGAACAACATTCAGGTCCAACAACCCGAGTTCAATCCTCAAGAGCTTCATGCATTCTCTTTGAAAAAAGAGCCACGAAGCTTCAATCTTCTTAGGCCAGAGATGCTACCATGGTTGGCATTTCCTGGTGGACCACACACAACTGATTTGTCCTCATCTTCATCATCAATCTTCTCCACAAGATTAGATCATCATCGAGAGCTCACACTAACTCATCACCAACGTCAACATCTATATGAGAATTCAAATTCCAACTCCAACCCAATAATCTCAAACCCTAACCCTAACTCAGGCCCCACCCATTCTGCTGCCTACCAACCTGCAGCTCCCTCACCTCACATGTCAGCCACAGCACTATTGCAGAAAGCAGCTCAAATGGGTGCTACCATGAGCAAAACTGGTTCATCAGCAGGCATGGGAAGGCCCCACATAGAAGCTCACGTGTCTGTTGATATGGGAAACAATGCAAGTGGCAGTGGCAGTTGTTTTGGTCTGAAATTGTCATCACGTGAAGAACAGTCTCAGATGACCACTGCGTTTGCCCATAGCTTAGCTCCTTTTGGGAATAAAGCTGCTGCAGTGCCTTCTGCCATTGCAGGGAACACAGCAACCAGTGTTGCTAACAGTACTGCTACTTCTTCCTCAAGTGTCAATGTTACCCCATCGTTCCTTCAAGTAATGATGAATTCTTTGTCTTCTGGTCATACCACTCCTAGCTTTGAAGGAACTCATTCGTATGAAGATGCATTTTGTGGGATTTTGAATTCACACAAAGATGGCAGTGCCATAGATGTCAGTCTCACAAAAACAAGCTACCTAAATAGAAGTAGTGATAATGAAGTAGGTGCCAAAAATGGGGGCCATGGCAATGACAGTTTGACTAGGGATTTCTTGGGTCTCAAGCCTCTTTCTCATAGTGACATTTTGAGCATTGCTGGTCTTGGAAATTGCATGGGAGATTCACAGGTAGACCATCAACAAAGTACTCAATCCCAAAAACAGTGGCAAGGTTAG 1737 0.4375 MMKDVRLLQQQQLVEENMSNLTSASCEASASSGNKTEVGTSTNYPQQYLTSSQTQTQSVKKKRSLPGNPDPDAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHWEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITTNPLLPCQPSGSSASHMNNIQVQQPEFNPQELHAFSLKKEPRSFNLLRPEMLPWLAFPGGPHTTDLSSSSSSIFSTRLDHHRELTLTHHQRQHLYENSNSNSNPIISNPNPNSGPTHSAAYQPAAPSPHMSATALLQKAAQMGATMSKTGSSAGMGRPHIEAHVSVDMGNNASGSGSCFGLKLSSREEQSQMTTAFAHSLAPFGNKAAAVPSAIAGNTATSVANSTATSSSSVNVTPSFLQVMMNSLSSGHTTPSFEGTHSYEDAFCGILNSHKDGSAIDVSLTKTSYLNRSSDNEVGAKNGGHGNDSLTRDFLGLKPLSHSDILSIAGLGNCMGDSQVDHQQSTQSQKQWQG* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01260 578 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 562 IPR031140 -
Pte7g01260 578 MobiDBLite consensus disorder prediction 321 356 - -
Pte7g01260 578 FunFam protein indeterminate-domain 12-like 68 136 - -
Pte7g01260 578 SMART c2h2final6 89 111 IPR013087 -
Pte7g01260 578 SMART c2h2final6 130 160 IPR013087 -
Pte7g01260 578 SMART c2h2final6 165 185 IPR013087 -
Pte7g01260 578 MobiDBLite consensus disorder prediction 321 345 - -
Pte7g01260 578 MobiDBLite consensus disorder prediction 24 63 - -
Pte7g01260 578 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Pte7g01260 578 Gene3D Classic Zinc Finger 68 135 - -
Pte7g01260 578 Gene3D Classic Zinc Finger 143 223 - -
Pte7g01260 578 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Pte7g01260 578 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Pte7g01260 578 MobiDBLite consensus disorder prediction 24 72 - -
Pte7g01260 578 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Pte7g01260 578 Pfam Zinc-finger double-stranded RNA-binding 89 111 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01260 Pte-Chr7 36930528 36933266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01260 14 230 IDZ Gene Family AT1G55110 76.256 8.88e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte7g01260 zf-C2H2_jaz 8.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01260 K25870 - qsa:O6P43_027636 652.514