Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01254 ATGGGAAACCAGAAGCAGAAGTGGACGGCAGATGAGGAAGTAGCTTTACAGGCAGGAGTAGCAAAGCATGGTCCTGGAAAATGGAAGAACATTCTCAAAGACCCCGAGTTTGCTCCGTTTCTCACTACCCGTTCCAACATTGACCTCAAGGACAAGTGGCGGAATTTGAGTGTCAGTAATTCTGCTCAAGGTTCTAAAGAAAGGTCAAGAAATCCAAAGCCCAAAACTACACAGCCTTCTCATGTATCCAATGTACAGAATCCTGCTCCTGCTCTTACTCCTTCTCCTGCACCTGCTCCTTCTCTTCACCAGGCAGTAGCTTCTGATGCCATTACAAATGATCCTTCCAATAAGCCGGAAGGAAAGGAACCTCCAGGGAGCTATGCAATTTTTGATGCTTTGTCAACTATAAAAGACTCTAATGGATCTGACGTGAATTCCATATATAAGTTCATTGAGCAAAAATATGACGTGTCTCATAATTTCAGAAAGCAACTTGGTACGAAATTGAGAAGACTCGTTGCAGCAGGGAAACTTGAGAAGATACAAAACAATTACAAACTTAAACATGAAACCACCTTGGGAACAAATTCATCTACAGCAAAACCGAAGGATGTCAGGCCACGACAGATTCAGGTTCCTGCCACCTTGACTTCTGCTGAAACAGTGAAGGATGCTTCTGATATTGCTGCCAGACTAGTTGCTGAAGCAGAGCAGAAGTCCACCGCGGCTGCTTTGGCTGTCAATACTTATGAAACTCTATCAAAGTTGGCAGAAGAGACTGATTCGATTCTGCAGCTAGTAAAAGATATCCATGAACAATGTTCACGCGGTGAGATTTTTCTCTTGGCATATGATAGCAGGTGTAAGTTCACATAG 879 0.4346 MGNQKQKWTADEEVALQAGVAKHGPGKWKNILKDPEFAPFLTTRSNIDLKDKWRNLSVSNSAQGSKERSRNPKPKTTQPSHVSNVQNPAPALTPSPAPAPSLHQAVASDAITNDPSNKPEGKEPPGSYAIFDALSTIKDSNGSDVNSIYKFIEQKYDVSHNFRKQLGTKLRRLVAAGKLEKIQNNYKLKHETTLGTNSSTAKPKDVRPRQIQVPATLTSAETVKDASDIAARLVAEAEQKSTAAALAVNTYETLSKLAEETDSILQLVKDIHEQCSRGEIFLLAYDSRCKFT* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01254 292 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Pte7g01254 292 MobiDBLite consensus disorder prediction 75 90 - -
Pte7g01254 292 MobiDBLite consensus disorder prediction 190 209 - -
Pte7g01254 292 Gene3D - 118 205 IPR036388 -
Pte7g01254 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pte7g01254 292 MobiDBLite consensus disorder prediction 52 67 - -
Pte7g01254 292 SUPERFAMILY "Winged helix" DNA-binding domain 124 188 IPR036390 -
Pte7g01254 292 FunFam Telomere repeat-binding factor 1 8 87 - -
Pte7g01254 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pte7g01254 292 MobiDBLite consensus disorder prediction 52 101 - -
Pte7g01254 292 MobiDBLite consensus disorder prediction 190 205 - -
Pte7g01254 292 SMART sant 4 59 IPR001005 -
Pte7g01254 292 SMART h15plus2 96 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte7g01254 292 Gene3D - 8 87 - -
Pte7g01254 292 FunFam Telomere repeat-binding factor 1 2 58 - -
Pte7g01254 292 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Pte7g01254 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 122 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte7g01254 292 PANTHER SINGLE MYB HISTONE 4 1 283 IPR044597 GO:0003691
Pte7g01254 292 CDD SANT_TRF 6 56 - -
Pte7g01254 292 Pfam linker histone H1 and H5 family 125 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01254 Pte-Chr7 36844187 36847937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01254 1 284 Single Myb Histone (SMH) Gene Family AT1G72740 44.755 4.64e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte7g01254 Linker_histone 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01254 K09422 - cave:132188703 320.472