Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01237 ATGTCCTCTCAAGAACAAGCACTTCTCTCCCTTTTCTCTCAAGTAGCCCTATCCTTCGACGGCGCTGTTTTGGGTGTGGTCTTGGCTGTCACCGCCGCACGCTCCGTCATCAAGTTTTGCTCCAATTCGAACGCTCTCGAAACTCTTCTTTCGACTCCCTCTGTCTCAGTTGGCGACCTGCGGTCACTACTAGACAGTTCAGAAGATAAGTGTAGTGGTGTTTCCGAGAAGCTTGTTATTGTACGGGGTATAGTCGAAGCGAAGGTGGCTTCTGAGAATAGCTGGAGTGGTCGGTCAAACTTCCTGGTTTCTCGCGAATCTGGGGACAGAGCTGTGATCATTCAGAGAACACAGACGTGTATCTACAATGAATGGAAGGGGCTTCTTGGTTGGACATCTGACTTCCGAGCCTTGTTTGCAAAGTCACGGCGAGAGCAGGAATTATTGTCGTTGAAAATGGTACCATTTGTTCTTGTTGACCGATCGTCAAATTCTGATTTTGTTGCGGTCAACATGGAGGGATCTAAACACTCACTGCCTCTCATAACTGTGTATCATCAATTGCAGCCAGTAGATTCTTCTCCTTATACATTCTTACAAGCACTTTTTGGTCATGAGTATCCGGTTGGGCTACTGGATGAGGAGAAGATTCTACCATTGGGGAAGGATATTAGTGCTGTTGGCCTTTGTAGCATTAACAATGGAATTACTGAGATCAAGTCATGCAAGGATCTTCCTTATTTCTTGTCTGACCTTACGAAAGATCAGATGATTGTAGATCTGTCTTTCAAAACAAGAGTGCTCTTCTGGAGTGGGATTGTCCTAGGTTCACTTTCAATAAGTGTTCTTGGCTATGCTATTTACAGGAACTGGAATAGATGGAAAAGCTGGAGGCAACAGAGACAGATCCAGCGGAGAGCCGATGCAGTTGATAATGACTCGGACCAAATTGCATCCGATGATGAGACAGAAGATGTGCCAGATGGTCAGTTGTGCGTTATATGTTTAATGAATAGAAGGCGCTCTGCATTTATTCCATGTGGTCACCTTGTTTGCTGCCAACGATGTGTTCTATCAATTGAACGTGAAGTAGCCCCCAAATGTCCTGTTTGCCGCCAACAAATCCAGAATTCAGTGCGGATATTTAGTTCCTGA 1155 0.4528 MSSQEQALLSLFSQVALSFDGAVLGVVLAVTAARSVIKFCSNSNALETLLSTPSVSVGDLRSLLDSSEDKCSGVSEKLVIVRGIVEAKVASENSWSGRSNFLVSRESGDRAVIIQRTQTCIYNEWKGLLGWTSDFRALFAKSRREQELLSLKMVPFVLVDRSSNSDFVAVNMEGSKHSLPLITVYHQLQPVDSSPYTFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCSINNGITEIKSCKDLPYFLSDLTKDQMIVDLSFKTRVLFWSGIVLGSLSISVLGYAIYRNWNRWKSWRQQRQIQRRADAVDNDSDQIASDDETEDVPDGQLCVICLMNRRRSAFIPCGHLVCCQRCVLSIEREVAPKCPVCRQQIQNSVRIFSS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01237 384 ProSiteProfiles Zinc finger RING-type profile. 332 372 IPR001841 -
Pte7g01237 384 Pfam E3 Ubiquitin ligase 139 284 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pte7g01237 384 Pfam Zinc finger, C3HC4 type (RING finger) 330 377 - -
Pte7g01237 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 384 IPR044247 GO:0004842
Pte7g01237 384 SUPERFAMILY RING/U-box 322 378 - -
Pte7g01237 384 CDD RING-HC_SPL2-like 327 373 - -
Pte7g01237 384 SMART ring_2 332 371 IPR001841 -
Pte7g01237 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 384 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01237 Pte-Chr7 36723314 36726462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01237 329 381 C3H Transcription Factor Family AT3G06140 39.623 2.31e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01237 K15688 - qsa:O6P43_027545 509.22