Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01214 ATGGAGGGTTCATCATCATCGGAACACTTTTATTCTGATTTAAGTGTCGATGAATTCTACCTCTCTGTCCTTCACGATAGTGAAGAAATCTTTCCAATATCTGATGAGAAATATGCTGAAGAGTTGCAGCTTCAAGAAGCTCTTGTGTCTTCAGCCATCTCATCAAAAATGAGAAATGAAGCAACTGGAGAGAATGAAGTAAACACGACCCCTTCGAGAGAAAAGCGAAAAAAGGAAATAGGTCAATCTTCACACTCCTTTTGTGTAATTTGTATGGAGCACAACCCTCCTGACGGCATGTTCAGAAGCGCCAGCTGCAGTCACACATTCTGTACTGACTGTATAACTCAATATGTAGCAAACAAAATCCAAGAGAATATATCACAGGTGAAGTGTCCAGACCCCCACTGTAGTGGTGAGTTGGGGCCTCAGTGTTGTCAGTCAATTATTCCAAAAGAAGTGTTTGACAGATGGGAAAATGCTCTTTGCGAATCATCGATTCTGGGTTCTCAGAAGTTCTACTGTCCTTTCAAGGACTGCTCAACTTTGTTGATTGATGATGGAGAGGAAGTTGTTACCATTTCAGAGTGTCCAAATTGTAGGAGACTGTTCTGTGCTCAATGCAAAGTTGCATGGCATTCTGGAATGGATTGCAAGGGATATAAGAATAACTTGAAAAATATTGATCAAGAAAGGGAAGAAATAAAGATGATGGAAGATCTTGCTAAGAACAAGCAATGGAGAAGATGCCCCAATTGCAAATTCTATGTGGAGAAGAAGGATGGCTGCCACCATATCTCATGCAGGTGTGGGAAGGAATTCTGCTACGGCTGTGGTGCTGCATGGACATCCACCCATGCATGTAGATTCTAA 873 0.417 MEGSSSSEHFYSDLSVDEFYLSVLHDSEEIFPISDEKYAEELQLQEALVSSAISSKMRNEATGENEVNTTPSREKRKKEIGQSSHSFCVICMEHNPPDGMFRSASCSHTFCTDCITQYVANKIQENISQVKCPDPHCSGELGPQCCQSIIPKEVFDRWENALCESSILGSQKFYCPFKDCSTLLIDDGEEVVTISECPNCRRLFCAQCKVAWHSGMDCKGYKNNLKNIDQEREEIKMMEDLAKNKQWRRCPNCKFYVEKKDGCHHISCRCGKEFCYGCGAAWTSTHACRF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01214 290 Coils Coil 218 248 - -
Pte7g01214 290 SUPERFAMILY RING/U-box 169 224 - -
Pte7g01214 290 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Pte7g01214 290 Pfam IBR domain, a half RING-finger domain 157 218 IPR002867 GO:0008270
Pte7g01214 290 Pfam IBR domain, a half RING-finger domain 233 288 IPR002867 GO:0008270
Pte7g01214 290 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 282 IPR031127 GO:0004842|GO:0016567
Pte7g01214 290 SUPERFAMILY RING/U-box 83 165 - -
Pte7g01214 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 170 IPR013083 -
Pte7g01214 290 CDD Rcat_RBR_unk 246 282 - -
Pte7g01214 290 SUPERFAMILY RING/U-box 233 288 - -
Pte7g01214 290 Pfam RING-type zinc-finger 88 133 IPR027370 -
Pte7g01214 290 FunFam RBR-type E3 ubiquitin transferase 83 169 - -
Pte7g01214 290 MobiDBLite consensus disorder prediction 55 76 - -
Pte7g01214 290 SMART ibrneu5 156 218 IPR002867 GO:0008270
Pte7g01214 290 SMART ibrneu5 231 288 IPR002867 GO:0008270
Pte7g01214 290 ProSiteProfiles Zinc finger RING-type profile. 88 133 IPR001841 -
Pte7g01214 290 Gene3D - 215 290 - -
Pte7g01214 290 ProSiteProfiles TRIAD supradomain profile. 84 290 IPR044066 -
Pte7g01214 290 CDD BRcat_RBR_unk 169 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01214 Pte-Chr7 36527884 36528756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01214 81 280 C3H Transcription Factor Family AT2G19610 26.066 2.62e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01214 K11975 - qsa:O6P43_018461 401.364