Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01190 ATGGAGGGTGAAAGTAAGGTCTCTGGGAGTGGTGGAGCTGACCCTACAGCTCGTTCACCACCCTCATACTGGTTGGATGCCATTGAAGATCTTACTTGTGATTTCATCGATTTTGAAGCTGATTCTGGTGCCCCAGAGCACGTGGATAACAATTTGAATCAGGATGGACTTGTTAATGACTTCTTTGGTGGAATTGATCATATACTGGACAGCATAAAAAATGGTGGGGGTTTACCTGTTGTTAGTGCGAGCGAGTCCCTTGTTAACGGTAATGGAATTCAAGCTGATGGCGGGAATTCCAATGATGGTGTGTCCGAGTCTTCTAAGATGCAAGTTGAGAGCTCAATTGTCGAATACAATCGTGCTAACCAAGAAGATTTGGAAAAGAAGCGTGATATGGTGAATGGAACTTGTAAGGGTAAGGGCGGTAATGGGAGTGTGTTGTTGGAACGAAATGGAGATGAAAAGGTAAGTGATAATTCTACAAACCAAAGTGGTGTGGAAAAGTATGAGATTTCGAGGGAACGTGATTGTGATGGTGGAGAAAGATGCAACAAAAGAGCACGGTACAGTGAGCATAGGAGTGAGAAACATCATTTTAATGGTTCCAATAATTACAATCCAAAGGATAGGGACAGAAATGGCCATAGGAAGAGACAGCGTGATTGGGATGAGTGTGATAGGAAGGACAGGGATAATAGCAGGAGAAGAGATTTTTATGGCAATGGAAATAGGAGGGATGGGAAGGATAGGAAACCTAGGGGCTACTGGGAGAGAGATAAGTCTGGTTCTAGTGGGATGGTTTTTCACTTGGGCACTTGGGAAGCCGTTCGTAATCAAGAACCTAAGATGGCTAATGAGTTAAACAGGGATAACAATGGGAAGGTTGAGAAGAAAAGTGACGCGCCGAAGGAGAGACTTCCCGAGGAACAAGCTCGGCGGTATCAGTTGGAAGTTCTTGAACAAGCGAAGACCAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGAAAGACGCTTATTGCGGTTTTGCTAATAAAGAGTATTTTTAATGATTTACAAAAGCAGAACAAGAAAATGCTGGCTGTATTTCTTGTTCCAAAAGTTCCACTTGTTTATCAGCAAGCAGAAGTGATTCGTGAGCGAACTGGTTACCAAGTGGGTCATTACTGTGGAGAAATGGGGCAGGACTTTTGGGATGCACGGAGATGGCAACGGGAATTTGAAACAAAGCAGGTCTTAGTGATGACAGCCCAAATTCTTCTGAACATTCTGAGGCATAGCATTATAAAGATGGACACAATTAAGCTTCTGATCCTGGATGAGTGCCATCATGCGGTGAAAAAGCATCCATATTCATTGGTGATGTCTGAATTCTATCATACAACTTCTAGAGAGAGGAGACCTTCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGGGTCTCAAGTCAAGTAGATTGCGCTATAAAAATTCGTAATCTTGAAAGTAAGCTGGATTCAACAGTTTGTACCATAAAAGACCGCAAAGAGCTAGAGAAACATGTACCTATGCCGTCGGAAGTTGTGGTGGAGTATGACAAAGCAGCAAACTTATGTTACCTACATGAGCAGATAAAGCAGATGGAAGTCGAAGTTGAAGAAGCAGCAAAATTAAGCTCCAGAAGGAGCAAATGGCAATTCATGGGAGCTAGAGATGCAGGGGCCAAAGAAGAGTTGCGTCAAGTTTATGGTATTTCTGAGAGAACAGAAAGTGATGGTGCTGCAACACTTATTCAGAAGTTGAGAGCTGTAAATTATGCACTTGGTGAACTGGGCCAGTGGTGTGCATACCAGGTTGCGCAATCTTTTCTGAAAGCTTTACAAAATGATGAGAGGGCCAACTACCAAGTTGATGTCAAATTTCAAGAATCATATCTGAGCAAAGTCGTCTCGCTTTTGAATTGTCAACTCTTAGAGGGTGCAGCTTCTGAGAAGGACTCAAAAGCTGCTGACACACGTGATGTCTCTCATGAAGGGTCTCAAAATGATGAAATGGAGGAAGGAGAGCTACCAGACAGCCATGTTGTTTCTGGTGGGGAGCACGTGGATGTGGTAACAGGAGCTGCTGTTGCTGACGGAAAAATAACTCCCAAGGTGCAGTCTATAATAAAAATACTTTTCAAATATCAACACACAGAAGACTTCCGAGCAATCATCTTTGTGGAGCGTGTTGTGTCTGCTTTAGTTCTTCCTAAGGTTTTTGCAGAACTTCCATCTCTGAATTTTGTAAGAAGTGCAAGTTTGATTGGTCACAATAATAGTCAGGAAATGCGGACAAGCCAAATGCAGGACACAATCAGCAAATTCCGTGATGGGCAGATCACATTATTGGTTGCCACTAGTGTTGCTGAGGAGGGACTTGACATTCGGCAATGCAATGTTGTTATTCGCTTTGACCTAGCGAAGACTGTTTTGGCTTACATTCAGTCAAGGGGCCGTGCTAGAAAACCTGGATCAGATTATATTTTGATGGTTGAAAGGGGAAATTTATCGCATGAAGCATTTTTGAGGAATGCCAGGAATAGTGAGGAGACCTTGAGGAAAGAGGCGATAGAGAGGACAGACCTTAGTCATCTTAAAGATACTTCAAGGTTGATTTCTATGGATACTTCACCAGGAACAGTTTACCAGGTGGAATCAACTGGTGCAATTGTGAGCTTAAATTCTGCAGTTGGTCTCATCCATTTCTATTGCTCTCAGCTACCCAGTGACAGATACTCAAGTCTCCGTCCTGAGTTTATTATGGAGAAGCATGAAAAGCCTGGCAGTACCACAGAATATTCTTGCAAGCTTCAGCTACCCTGCAATGCACCTTTTGAGTATCTGGATGGTCCTTTGTGCAGTTCCATGCGCCTAGCACAACAGGCTGTTTGTTTGGCTGCTTGCAAGAAGCTCCATGAGATGGGAGCCTTCACTGATATGCTTCTTCCAGACAAAGGAAGTGGTGAAGAAAAAGAAAAAGTTGAGCAGAATGATGAAGGTGATCCACTTCCTGGGACAGCCAGGCACAGAGAGTTCTATCCTGAAGGTGTTGCTGACATTCTCAAGGGTGAATGGATCTTATCTGGAAAAGAAGATTGTGATGGCTCTAAGTCACTTCACCTTTATATGTATGCTGTGAAGTGTATAAATGTCGGATATTCAAAGGATCCATTCTTGACACAAGTTTCAGATTTTGCTGTAGTTTTTTGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTGTCGCTCGAACCATGACTGCAAAGGCATCTCTTGTTTTTAAAGGGTCAATAGATATAACTGATAGCCAGTTGGCATCTCTCAAGAAATTTCATGTGAGATTGATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACACCCTGGGATTCTGCAAAGGCATATCTATTTGTCCCTATGGTTGGCGATAAATCTGTAGATCCTTTAGTTCAAATCGATTGGGATCTGGTTGAGAAAGTAACTGAAAGTAGTTTATGGAGCAATCCCCTTCAAAGAGCTCGACCAGATGTCTATCTTGGAACAAATGAGAGAACGTTAGGTGGAGATAGGAGGGAGTATGGATTTGGTAAATTGCGTCATGGCATGGCTTTTGGGCAAAAGTCCCATCCCACCTATGGAATTAGAGGTGCCGTAGCACAGTTTGACGTTGTCAAAGCTTCTGGATTGGTTCCTCAACGCCATACATCAGAAATGCACAGGCAGAAGAATTTGATTGCTGAAGGAAGATTGGTGATGGCTGATGCTTGTGCTCAAGCAGAGGAACTGGTTGGGAGAATAGTAACTGCTGCTCATTCTGGGAAGAGGTTTTATGTAGATTCTATTCGCTATGATATGACTGCAGAAAACTCTTTTCCCAGGAAAGAGGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTATTACAAGCAAAAATATGGTGTTGAACTGATCTATAAACATCAACCACTTATAAGAGCACGTGGTGTATCATATTGCAAAAACCTTCTGTCCCCTCGATTTGAACACAATGAAGAAAATGAAGGTGAATCTGAAGACACTCACGACAAAACATATTACGTGTTTCTCCCTCCTGAGCTATGTTTGGTACATCCACTGCCCGGTTCACTTGTTCGTGGTGCACAGAGATTACCATCAATAATGAGGAGGGTTGAAAGTATGCTGCTGGCAGTTCAACTTAAGGATATGATAGGCTTTCCCGTCCCTGCTGCAAAGATCTTGGAGGCCTTGACAGCTGCCTCATGTCAAGAGACATTCTGTTATGAAAGGGCAGAACTTCTGGGAGATGCTTACTTGAAATGGGTTGTCAGTCGATTTCTTTTTCTCAAATATCCTCAGAAACACGAGGGCCAGCTCACTAGGATGAGGCAACAAATGGTCAGCAATATGGTTTTGTATCACTATGCATTAGATAAAGGTCTTCAGTCATACATACAAGCAGATCGGTTTGCCCCATCACGATGGGCTGCTCCAGGAGTGCTGCCTGTGTACGATGAGGATACCAAGGATGAAGAAACATCCTTCTTTGACGAGGAAAGGATAGCTGTTAAGAATGAGGGATTGGATCAAGATGTTGATGGTATTGAGGATGAATTAGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTGTTATCCAGCAAGACACTTGCTGATGTTGTTGAAGCACTCATTGGGGTATATTATGTTGAAGCAGGGAAGCATGCTGCTAACCACCTCATGAAATGGATTGGCATTCAGGTGGAGATGGATCCTGATGAGATACAATGCATAAGAAAGCCATCCAATATTCCTGAAAGCATACTTAAGAGTATTGATTTTGATGGTTTAGAAGGTGCTTTGGCTATGAAATTCAAAGATAGAGGTCTGTTGGTGGAAGCTATAACTCATGCATCCAGACCATCTTCAGGAGTGTCATGCTATCAGCGGTTAGAGTTTGTTGGTGATGCAGTATTAGATCATTTGATTACGAGGCACTTATTTTTCACTTACACTGATCTGCCGCCGGGCCGGTTGACTGATCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCTGTCAAACATAACCTCTACGTGCATCTTAGGCATGGATCCAGTGCCTTGGAAAAACAGATCAAGGAATTCGTGAAAGAAGTAAAAGATGAATTACTAAAGCCAGGGTTCAACTCCTTTGGATTGGGAGACTGCAAAGCTCCCAAGGTTCTTGGTGATATTGTTGAATCTATTGCTGGTGCCATCTTTCTGGACAGTGGCCGCAACACTGTCATGGTGTGGAAGGTTTTCCAGCCTTTGTTGCATCCAATGGTCACACCAGAGACACTTCCAATGCATCCTGTGCGTGAGCTTCAAGAGAGATGCCAGCAGCAGGCTGAAGGCTTAGAGTATAAGGCGAGTAGAAGTGGCAACCTGGCCACCGTTGAAGTCTTCATTGATGGTGTCCAAATTGGAACTGCTCAAAATCCTCAGAAGAAAATGGCTCAGAAACTAGCTGCCAGGAATGCACTCGCAGCTTTGAAAGAAAAGGAAATGGCAAAAGCTAAGGAGAATGACGATGAAAACGAAAAGAAAAAGAACAGCAATCAAACGTTCACCAGGCAAACGCTGAATGATATATGCTTACGTAGAAATTGGCCTATGCCACTTTACAGGTGTGTGAATGAAGGTGGTCCTGCGCATGCAAAGAGGTTCACATTTGCTGTTCGTGTCAACACTACTGATAGGGGATGGACAGATGAATGTGTAGGGGAACCAATGCCAAGTGTCAAGAAGGCTAAAGACTCTGCAGCTGTTCTTCTCTTGGAACTAATTAATAAATTGTATTCATGA 5916 0.431 MEGESKVSGSGGADPTARSPPSYWLDAIEDLTCDFIDFEADSGAPEHVDNNLNQDGLVNDFFGGIDHILDSIKNGGGLPVVSASESLVNGNGIQADGGNSNDGVSESSKMQVESSIVEYNRANQEDLEKKRDMVNGTCKGKGGNGSVLLERNGDEKVSDNSTNQSGVEKYEISRERDCDGGERCNKRARYSEHRSEKHHFNGSNNYNPKDRDRNGHRKRQRDWDECDRKDRDNSRRRDFYGNGNRRDGKDRKPRGYWERDKSGSSGMVFHLGTWEAVRNQEPKMANELNRDNNGKVEKKSDAPKERLPEEQARRYQLEVLEQAKTKNTIAFLETGAGKTLIAVLLIKSIFNDLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMDTIKLLILDECHHAVKKHPYSLVMSEFYHTTSRERRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSTVCTIKDRKELEKHVPMPSEVVVEYDKAANLCYLHEQIKQMEVEVEEAAKLSSRRSKWQFMGARDAGAKEELRQVYGISERTESDGAATLIQKLRAVNYALGELGQWCAYQVAQSFLKALQNDERANYQVDVKFQESYLSKVVSLLNCQLLEGAASEKDSKAADTRDVSHEGSQNDEMEEGELPDSHVVSGGEHVDVVTGAAVADGKITPKVQSIIKILFKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLNFVRSASLIGHNNSQEMRTSQMQDTISKFRDGQITLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISMDTSPGTVYQVESTGAIVSLNSAVGLIHFYCSQLPSDRYSSLRPEFIMEKHEKPGSTTEYSCKLQLPCNAPFEYLDGPLCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEKVEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKEDCDGSKSLHLYMYAVKCINVGYSKDPFLTQVSDFAVVFCNELDAEVLSMSMDLFVARTMTAKASLVFKGSIDITDSQLASLKKFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVGDKSVDPLVQIDWDLVEKVTESSLWSNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPQRHTSEMHRQKNLIAEGRLVMADACAQAEELVGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYKHQPLIRARGVSYCKNLLSPRFEHNEENEGESEDTHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDMIGFPVPAAKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYHYALDKGLQSYIQADRFAPSRWAAPGVLPVYDEDTKDEETSFFDEERIAVKNEGLDQDVDGIEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEAGKHAANHLMKWIGIQVEMDPDEIQCIRKPSNIPESILKSIDFDGLEGALAMKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLYVHLRHGSSALEKQIKEFVKEVKDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRNTVMVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVFIDGVQIGTAQNPQKKMAQKLAARNALAALKEKEMAKAKENDDENEKKKNSNQTFTRQTLNDICLRRNWPMPLYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELINKLYS* 1972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01190 1971 Pfam Dicer dimerisation domain 906 994 - -
Pte7g01190 1971 FunFam Endoribonuclease Dicer 1 1269 1387 - -
Pte7g01190 1971 PANTHER DICER-RELATED 1269 1874 - -
Pte7g01190 1971 SUPERFAMILY PAZ domain 1264 1389 IPR036085 GO:0005515
Pte7g01190 1971 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 717 878 IPR001650 -
Pte7g01190 1971 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1893 1968 IPR014720 -
Pte7g01190 1971 SMART PAZ_2_a_3 1257 1413 IPR003100 GO:0005515
Pte7g01190 1971 SUPERFAMILY RNase III domain-like 1632 1800 IPR036389 GO:0004525|GO:0006396
Pte7g01190 1971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 845 IPR027417 -
Pte7g01190 1971 Gene3D Dicer dimerisation domain 901 1004 IPR038248 -
Pte7g01190 1971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 446 IPR027417 -
Pte7g01190 1971 Gene3D - 704 870 IPR027417 -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 1872 1889 - -
Pte7g01190 1971 CDD RIBOc 1649 1804 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 Gene3D paz domain 1269 1387 - -
Pte7g01190 1971 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1807 1870 IPR014720 -
Pte7g01190 1971 SUPERFAMILY RNase III domain-like 1405 1610 IPR036389 GO:0004525|GO:0006396
Pte7g01190 1971 Gene3D Ribonuclease III domain 1630 1804 IPR036389 GO:0004525|GO:0006396
Pte7g01190 1971 Gene3D - 1805 1883 - -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 662 688 - -
Pte7g01190 1971 SMART helicmild6 747 833 IPR001650 -
Pte7g01190 1971 Pfam PAZ domain 1274 1409 IPR003100 GO:0005515
Pte7g01190 1971 CDD SF2_C_dicer 713 841 - -
Pte7g01190 1971 Gene3D - 1899 1968 - -
Pte7g01190 1971 ProSiteProfiles Ribonuclease III family domain profile. 1432 1592 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1893 1964 - -
Pte7g01190 1971 CDD DEXHc_dicer 311 510 - -
Pte7g01190 1971 CDD DSRM_DCL_plant 1899 1968 - -
Pte7g01190 1971 FunFam Endoribonuclease dicer-like 1 901 1002 - -
Pte7g01190 1971 FunFam endoribonuclease Dicer homolog 1 1899 1968 - -
Pte7g01190 1971 SUPERFAMILY dsRNA-binding domain-like 1897 1966 - -
Pte7g01190 1971 Gene3D - 306 550 IPR027417 -
Pte7g01190 1971 ProSiteProfiles PAZ domain profile. 1275 1389 IPR003100 GO:0005515
Pte7g01190 1971 MobiDBLite consensus disorder prediction 992 1019 - -
Pte7g01190 1971 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 319 496 IPR014001 -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 1872 1892 - -
Pte7g01190 1971 FunFam Endoribonuclease dicer-like 1 705 867 - -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 284 309 - -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 1 22 - -
Pte7g01190 1971 SMART riboneu5 1428 1612 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 SMART riboneu5 1648 1804 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 Pfam Ribonuclease III domain 1668 1781 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 Pfam Ribonuclease III domain 1446 1592 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 ProSitePatterns Ribonuclease III family signature. 1668 1676 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 FunFam Endoribonuclease dicer-like protein 1411 1604 - -
Pte7g01190 1971 CDD RIBOc 1430 1602 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 MobiDBLite consensus disorder prediction 169 259 - -
Pte7g01190 1971 SMART ultradead3 308 511 IPR014001 -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 123 262 - -
Pte7g01190 1971 FunFam Endoribonuclease dicer-like protein 307 547 - -
Pte7g01190 1971 Pfam Helicase conserved C-terminal domain 714 831 IPR001650 -
Pte7g01190 1971 Gene3D Ribonuclease III domain 1414 1605 IPR036389 GO:0004525|GO:0006396
Pte7g01190 1971 SUPERFAMILY dsRNA-binding domain-like 1763 1879 - -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 994 1019 - -
Pte7g01190 1971 ProSiteProfiles Ribonuclease III family domain profile. 1633 1781 IPR000999 GO:0004525|GO:0006396
Pte7g01190 1971 SMART DRBM_3 1894 1967 IPR014720 -
Pte7g01190 1971 SMART DRBM_3 1808 1869 IPR014720 -
Pte7g01190 1971 Coils Coil 1542 1562 - -
Pte7g01190 1971 MobiDBLite consensus disorder prediction 283 309 - -
Pte7g01190 1971 Pfam Type III restriction enzyme, res subunit 309 478 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pte7g01190 1971 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 906 1001 IPR005034 GO:0016891
Pte7g01190 1971 FunFam Endoribonuclease dicer-like 1 1627 1802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01190 Pte-Chr7 36340855 36351956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01190 730 873 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 9.76e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01190 K11592 - qsa:O6P43_018504 3154.39