Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01176 ATGTCGATTGGAGAGCAAGCCTGTAGCTTAGCAGTTATGATACTTCATGATGATAGCATTGCCGTCACTGCGGAGAAAATTGCTACTTTGGTGAAATCTGCTAATGTTCAGGTTGAGTCCTATTGGCCAAGCTTGTTTAGCAAGCTTGCAGAGAAAAGAAGCATTGACGACCTCATTATGAATGTTGGAGCTGGTGGAGGCGGAGCTGCCGTTGCTGTTGCAGCTCCTGCTGCTGCTACTGGTGGTGCTGCCGCAGCTGCCCCTGCTGCTAAGGAAGAGAAGAAGGAAGAACCACAAGAAGAGAGTGATGACGATATGGGATTCAGTTTGTTTGATTAG 339 0.4779 MSIGEQACSLAVMILHDDSIAVTAEKIATLVKSANVQVESYWPSLFSKLAEKRSIDDLIMNVGAGGGGAAVAVAAPAAATGGAAAAAPAAKEEKKEEPQEESDDDMGFSLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01176 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
Pte7g01176 112 MobiDBLite consensus disorder prediction 84 112 - -
Pte7g01176 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Pte7g01176 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Pte7g01176 112 CDD Ribosomal_P1 5 61 - -
Pte7g01176 112 Gene3D - 1 63 IPR038716 -
Pte7g01176 112 MobiDBLite consensus disorder prediction 98 112 - -
Pte7g01176 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01176 Pte-Chr7 36244629 36245835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01176 1 113 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.407 8.37e-41 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01176 K02942 - nnu:104602010 129.413