Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01175 ATGATGTCTCAACCAAGGCCATTTCCAATGGTGGGCGGTGATAATCCTGGTCAATACAACGACACAATATTTACTAAGGTTTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGAGATACAATGAGAAGATACTTTGAGCAGTTTGGAGAGATTGTCGAGGTTGTTGTTATTACAGACAAAAACACTGGAAGATCCAAAGGCTATGGCTTTGTTACGTTTAAGGATCCAGTGGCCGCCATGAGGGCATGTCAGAATCCATCTCCTATAATTGATGGAAGAAGAGCAAACTGCAACCTAGCATCTCTTGGTGCAAGCAAGGCGCATCCACCAACTCCTCCACATGGTGTGGGACGGTATAGACCTGCGGCAGGACTGGTGGCGCCACCTGCTTATCACGGTAGCTCTTCCTTCTTCCACCAATCCACTGGACATTACTCATTTCCTTATTCAGCATACGGGTCTCCGGGTTATTCACAAGATACCATGTTCCCAATGAACTATTACAGTTTCTATGGTGGTGGGGGGCAACAGTTCTCACCATATTCCATTTCAGTTGGGGCATCTGGGCAGCCAGGGATGATCCCTTGTTTTCATCCATACTATGCTCCAAATGCACAGAACAGTCAGATTACTCATGGATTTGGAATTCAATACCCCCAGATGATGCAGTTCTTTTATTTGCCACAGCACTATGGCTCTGCGGGGATTCTGTCACTTCCTTCCTCAATTGCAATGCCAGCTACGATCCCAGGGGCAACAGCAACAGGAACAACAACAGTAACAACTGCAGTAGCTGAATCTGGTATGGTTGGTGGAGGGCTAAATTCTCCACAACCTTCTGCAACAACTCCTGAACAAGTTTCTTCAAATTAA 873 0.4628 MMSQPRPFPMVGGDNPGQYNDTIFTKVFVGGLAWETQRDTMRRYFEQFGEIVEVVVITDKNTGRSKGYGFVTFKDPVAAMRACQNPSPIIDGRRANCNLASLGASKAHPPTPPHGVGRYRPAAGLVAPPAYHGSSSFFHQSTGHYSFPYSAYGSPGYSQDTMFPMNYYSFYGGGGQQFSPYSISVGASGQPGMIPCFHPYYAPNAQNSQITHGFGIQYPQMMQFFYLPQHYGSAGILSLPSSIAMPATIPGATATGTTTVTTAVAESGMVGGGLNSPQPSATTPEQVSSN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01175 290 MobiDBLite consensus disorder prediction 273 290 - -
Pte7g01175 290 SUPERFAMILY RNA-binding domain, RBD 17 108 IPR035979 GO:0003676
Pte7g01175 290 CDD RRM_RBM24_RBM38_like 25 100 - -
Pte7g01175 290 Gene3D - 4 109 IPR012677 -
Pte7g01175 290 MobiDBLite consensus disorder prediction 269 290 - -
Pte7g01175 290 SMART rrm1_1 26 98 IPR000504 GO:0003723
Pte7g01175 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Pte7g01175 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Pte7g01175 290 PANTHER BOULE-RELATED 17 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01175 Pte-Chr7 36239920 36242879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01175 21 107 C2H2 Transcription Factor Family AT2G19380 42.529 1.52e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01175 - - qsa:O6P43_018526 379.793