Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01168 ATGTCACAAGGACCAGAAAATGAGGATCGTGTAGATTATGACGAAGAAAATTACATGGAGGAGATGGATGGTGATGTTGAGGGGCAGATAGATGAGGATGGGTCAGATGGAGGTGTTGGGGTAAACAATGAAGAGAGTGTTGAAGAAGAAGTACATGAAGATGCACCAGCAGAGGCTAATGAGAAAATTCACTTGCAAGACAAGGGTGAGATAGCTTTTGAATCTGTGGAAGATGAACAAAAGCTGTCTGCTTCAATTGATGAAGATGAAAGGGAGGAACATGATCGGCTTTTGACACTTCCGCCTCATGGTTCTGAAGTTTTCTTTGGGGGACTTCCTCGAGATGTGTCTGAAGATGATTTACATGGTTTATGTGATCCATTTGGTGAAGTTTTGGAGGTCAGATTAATGAAAGATAAGGACACGGGGGAAGGCAAGGGCTATGCTTTTGTAGCATTTAAAACAAAAGAGGTTGCACAAAATGTCATCGAAGCATTACATAACAAAGAATTCAAGGGTAGATCCTTGAGATGTTCACTCTCAGAAACTAAACACAGATTGTTTATTGGGAATGTTCCAAAGACCTGGACAGAAGATGAGTTACGGAAAGTCATTCAGGGTGTTGGTCCTGGAGTTGAGAACATTGAGCTCATAAAGGACCCACAAAATTCAAGCAGGAATCGCGGATTTGCTTTTGTCTTGTACTACAACAATGCATGTGCTGATTATTCTAGGCAAAAGATGTCAAATGCAAATTTTAAGCTCGATGGAAACTCACCAACTGTCACATGGGCTGATCCTAAGATGTCACCTGATCAATCTGCTTCTGCGCAGGTGAAAGCTCTTTATGTGAAGAACATTCCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTTTCTCGCCATGGGGAAGTGACAAAAGTAGTCATGCCACCTGGGAAAACTGGAGGAAAACGCAGTTTTGGTTTCATCCACTATACTGAGAGGTCTAGCGCATTGAAGGCTATCAAAGATACAGAGAAATATGAAATAGAAGGTCAAATGCTGGAAGTTGTTCTTGCTAAGCCCCAAACTGAGAAGAAGCCTGATACACATTCTTATAACCCAGGGCCTCATGCAAACAGCGTTCCTCATCCTACCTTTGTTGGCTTTTCTCCAAATGCATATGGTTCCGCAAGTGCCGGATATGGGGTTGCTGCTAGTTTTCAGCAGCCAATGATATATGGCCGCGGTCCAATGCCGGCCGGAATGCAAATGGTGCCAATGGTTTTACCAGATGGACGGATTGGATATGTTCTCCAACAGCCTGGTCTGCAGAGGCCACCCCCACCACGACCTCGTAGAAATAATGGTCCAAGTGGTTCGTCTGGCAGAGGAGGGGCTGGTGACGAAGGCAGCCATAACAGGAGATACCGACCATACTAG 1428 0.4419 MSQGPENEDRVDYDEENYMEEMDGDVEGQIDEDGSDGGVGVNNEESVEEEVHEDAPAEANEKIHLQDKGEIAFESVEDEQKLSASIDEDEREEHDRLLTLPPHGSEVFFGGLPRDVSEDDLHGLCDPFGEVLEVRLMKDKDTGEGKGYAFVAFKTKEVAQNVIEALHNKEFKGRSLRCSLSETKHRLFIGNVPKTWTEDELRKVIQGVGPGVENIELIKDPQNSSRNRGFAFVLYYNNACADYSRQKMSNANFKLDGNSPTVTWADPKMSPDQSASAQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPGKTGGKRSFGFIHYTERSSALKAIKDTEKYEIEGQMLEVVLAKPQTEKKPDTHSYNPGPHANSVPHPTFVGFSPNAYGSASAGYGVAASFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGLQRPPPPRPRRNNGPSGSSGRGGAGDEGSHNRRYRPY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01168 475 CDD RRM_SF 107 179 - -
Pte7g01168 475 MobiDBLite consensus disorder prediction 433 475 - -
Pte7g01168 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Pte7g01168 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Pte7g01168 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 348 IPR000504 GO:0003723
Pte7g01168 475 Gene3D - 267 367 IPR012677 -
Pte7g01168 475 Gene3D - 19 185 IPR012677 -
Pte7g01168 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Pte7g01168 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Pte7g01168 475 SMART rrm1_1 186 263 IPR000504 GO:0003723
Pte7g01168 475 SMART rrm1_1 281 353 IPR000504 GO:0003723
Pte7g01168 475 SMART rrm1_1 106 179 IPR000504 GO:0003723
Pte7g01168 475 SUPERFAMILY RNA-binding domain, RBD 100 184 IPR035979 GO:0003676
Pte7g01168 475 MobiDBLite consensus disorder prediction 9 32 - -
Pte7g01168 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 441 - -
Pte7g01168 475 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Pte7g01168 475 MobiDBLite consensus disorder prediction 358 380 - -
Pte7g01168 475 SUPERFAMILY RNA-binding domain, RBD 183 271 IPR035979 GO:0003676
Pte7g01168 475 SUPERFAMILY RNA-binding domain, RBD 273 375 IPR035979 GO:0003676
Pte7g01168 475 Gene3D - 186 266 IPR012677 -
Pte7g01168 475 MobiDBLite consensus disorder prediction 53 92 - -
Pte7g01168 475 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 185 - -
Pte7g01168 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Pte7g01168 475 MobiDBLite consensus disorder prediction 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01168 Pte-Chr7 36165063 36168535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01168 107 432 Eukaryotic Initiation Factors Gene Family AT1G71770 26.702 1.83e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01168 K13161 - gmx:100800974 665.996