Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01108 ATGGAGCAAGATGGAATTGAAGTTATTCCATATATGGATGTAAAGGATGAGGAAGACCGTGATTTTCCTGCTCTCAATAAAATTAATAATAATGGTCCCAGCAATATTAGTGTCCACGAGCTGCTTGAATGCCCTGTTTGTACAAATTCTATGTACCCTCCAATTCATCAGTGTCGCAATGGGCATACCCTTTGTTCAACCTGTAAAACAAGAGTACAAAATCGATGTCCAACTTGTAGACAGGAGCTTGGTGACATAAGATGTCTAGCTTTGGAGAAGGTAGCAGAGTCGCTTGATCTGCCCTGCAAATACTGCTCTCTTGGGTGTCCGGAGATATTTCCCTATTACAGTAAACTCAAACATGAGACTGTTTGTAAGTTTAGACCGTACAACTGTCCATATGCTGGATCAGAGTGCTCTATTGTTGGGGATATTCCATTTCTTGTTGCTCACTTAAGAGATGATCACAAGGTTGATATGCATTCTGGGTGCACATTCAATCATCGGTACGTCAAGTCAAACCCGCTTGAAGTAGAAAATGCTACGTGGATGTTAACGGTCTTCAACTGTTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCCTTTCAGCTTGGTGGGGCACCAGTTTATATGGGATTCCTTCGGTTTGTTGGTGATGAGAAAGAATCTCAAAACTACAGATATAGCCTTGAAGTAGGAGGAAATGGGCGTAAACTCACTTGGGAGGGTATTCCCCGAAGCATAAGGGATAGCCATAAGAAAGTTAGAGATAGCCACGACGGCCTTATTGTGCAGCGTAATATGGCCCTTTTCTTCTCAGGAGTTGATAGGAAAGAGTTAAAGCTACGAGTTACAGGAAGGATATGGAAAGAGCAACAAAACCCTGAAGGTGGAGCTTGTATTCCCAACCTTCGTGGCTAG 921 0.4267 MEQDGIEVIPYMDVKDEEDRDFPALNKINNNGPSNISVHELLECPVCTNSMYPPIHQCRNGHTLCSTCKTRVQNRCPTCRQELGDIRCLALEKVAESLDLPCKYCSLGCPEIFPYYSKLKHETVCKFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPLEVENATWMLTVFNCFGQYFCLHFEAFQLGGAPVYMGFLRFVGDEKESQNYRYSLEVGGNGRKLTWEGIPRSIRDSHKKVRDSHDGLIVQRNMALFFSGVDRKELKLRVTGRIWKEQQNPEGGACIPNLRG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01108 306 ProSiteProfiles Zinc finger SIAH-type profile. 97 157 IPR013010 GO:0008270
Pte7g01108 306 SUPERFAMILY TRAF domain-like 97 289 - -
Pte7g01108 306 SUPERFAMILY RING/U-box 43 85 - -
Pte7g01108 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 86 IPR013083 -
Pte7g01108 306 Pfam Seven in absentia protein family 86 285 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte7g01108 306 FunFam E3 ubiquitin-protein ligase SINAT3 94 152 - -
Pte7g01108 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 30 291 - -
Pte7g01108 306 ProSiteProfiles Zinc finger RING-type profile. 44 80 IPR001841 -
Pte7g01108 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 153 285 - -
Pte7g01108 306 CDD RING-HC_SIAHs 42 80 - -
Pte7g01108 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 152 IPR013083 -
Pte7g01108 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 155 285 IPR008974 GO:0005515
Pte7g01108 306 CDD Sina 158 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01108 Pte-Chr7 35597227 35600892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01108 34 292 C3H Transcription Factor Family AT2G41980 78.764 5.61e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01108 K04506 - cave:132188378 557.37