Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01105 ATGGACCCTGAAACTCGGAGTAAAATCGAGGAAACGGTGATGGATGTGCTGAAAAGGTCTAACTTGGAAGAGATGACTGAGTTCAAGGTTCGAGTTACGGCCTCAGAACGACTAGGGTTCGATCTGTCAGGCTCGCAGTATAAAGGATTTGTCAGAACTTTGGTGGAGTCTTACCTGCTTGCTGATGCTGAGGAGGAAGAAAAACAAAAACAGAGACGAAACGTTGAACAAGTGAAAGAAGGAGTAGGGAATATTGCGGAAGTGACCCCAGCAGTTGTGCAACCAAAGAAGGAGTTAAATGATGATGGGGACCTTGTTATCTGTCAGTTATCTCAGAGGAGGAAAGTGGAAATTCGAGATTTCAGAGGGAAAAGTTTTGTATCCATCAGGGAGTACTATCAGAAGGAGGGCAAGGAGTGTCCTTCTTCTAAGGGAACTAGCCTGACAACTGAACAATGGTCAGTAGTCTACGAGAATATTCCTCATATAGAGGAAGCTATAAAAAAGATGCAAGCAAAGTTAAGATCTGAAGTTGATGATAAGCAAGTACAAGCTTCAGATCCAAAAACTGAAGTTGCTCCTCCTCCTCAATTCTTACCTTGTGAGATCAATCGTTTTGATGGGAAGGATTTTCATACTTGGGTTCAGAAGATGGAGGCATATTTACAACAAATGAAAGTTGCCTATGTTCTCACTGATCCATGTCCAGATGTTGCAATTGGCTTGAATAAGACGACTGAGGAAATTGCTCAAGCCAAAGCCGCTGAACAGAGGTGGCTAAATGATGATTACATGTGTCGTCGCAACATCTTGATCTGTTTGTCTGATCATCTATTTTACAAGTATGGAAATAAAAAACTGAGTGCTAAAGAACTCTGGGAAGAGCTAAAACTAGTTTACCTAGATGAGGAATTTGGAACGAAAAGATCTCAAGTGAAGAAGTACATTGAATTTCAGATGGTAGATGGAAACACAATCTACGATCAAGTCCAAGATTTAAATAACCTTGCAGATTCAATTGTTGCGTCTGGAATCATAATAGACGAGAATTTTCATGTTAGTGCAATCCTTTCAAAGCTGCCCCCATCTTGGAAGGACTTCTCTGTCATGCTGACACGTGAAGAGTGTCTTCCTTTCTGGACGTTGATGGAACGCATAAAGATGGAGGTAGAATCTCGTTACCAAGCCAGACAAGAGGACCTTCCTGTTAATGCTGACTATCACCAAGGTTTCAGTTTTGGATCCAAGATCACAAATAGAAATCCATCGAGCATGTATAAGAAGAGCGACGCATATGGAGATAGGATGAAAATGGTCTGCGAGAATTGTGGAAAGAAAGGCCATCTTACCAGGAACTGCCGGAGAAAGTTCAACAAGGAATACGATGGGAAAAAAATAGAAAGCGACCACTCTGCTGCAAGAGGTACAAATTTGTTTGGAGCGCGTAGGCATTGGAGTAAATGA 1464 0.4173 MDPETRSKIEETVMDVLKRSNLEEMTEFKVRVTASERLGFDLSGSQYKGFVRTLVESYLLADAEEEEKQKQRRNVEQVKEGVGNIAEVTPAVVQPKKELNDDGDLVICQLSQRRKVEIRDFRGKSFVSIREYYQKEGKECPSSKGTSLTTEQWSVVYENIPHIEEAIKKMQAKLRSEVDDKQVQASDPKTEVAPPPQFLPCEINRFDGKDFHTWVQKMEAYLQQMKVAYVLTDPCPDVAIGLNKTTEEIAQAKAAEQRWLNDDYMCRRNILICLSDHLFYKYGNKKLSAKELWEELKLVYLDEEFGTKRSQVKKYIEFQMVDGNTIYDQVQDLNNLADSIVASGIIIDENFHVSAILSKLPPSWKDFSVMLTREECLPFWTLMERIKMEVESRYQARQEDLPVNADYHQGFSFGSKITNRNPSSMYKKSDAYGDRMKMVCENCGKKGHLTRNCRRKFNKEYDGKKIESDHSAARGTNLFGARRHWSK* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01105 487 ProSiteProfiles Zinc finger CCHC-type profile. 440 455 IPR001878 GO:0003676|GO:0008270
Pte7g01105 487 Coils Coil 242 262 - -
Pte7g01105 487 SUPERFAMILY ssDNA-binding transcriptional regulator domain 107 169 IPR009044 GO:0003677|GO:0006355
Pte7g01105 487 Pfam gag-polypeptide of LTR copia-type 259 393 - -
Pte7g01105 487 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 171 IPR045125 GO:0003713|GO:0060261
Pte7g01105 487 SUPERFAMILY Retrovirus zinc finger-like domains 422 459 IPR036875 GO:0003676|GO:0008270
Pte7g01105 487 Coils Coil 60 81 - -
Pte7g01105 487 Gene3D Transcriptional Coactivator Pc4; Chain A 97 175 IPR009044 GO:0003677|GO:0006355
Pte7g01105 487 Pfam Transcriptional Coactivator p15 (PC4) 108 156 IPR003173 GO:0003677|GO:0006355
Pte7g01105 487 Pfam DEK C terminal domain 5 59 IPR014876 -
Pte7g01105 487 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01105 Pte-Chr7 35572056 35575834 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pte7g01105 Retrotran_gag_2 2.4e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01105 - - qsa:O6P43_017796 554.288