Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01088 ATGAGGCCGGTGTTCGTTGGGAACTTTGATTACGATACTCGTCAGTCTGAGCTCGAAAATTTGTTCGCCAAGTATGGGAGGATTGAGCGCGTGGATATGAAATCTGGATTTGCTTTTGTTTATTATGAGGATGAACGTGATGCAGAAGATGCAATTCATGCACTTGACAATCTGCCCTTTGGGTATGATAGGCGCAGGCTATCAGTGGAATGGGCCAGGGGCGAGCGGGGGCGGCACCGCGATGAGTCAAACCCTAACCAGAGACCCACTAAAACTCTGTTTGTTATCAACTTCGATCCAGTTCGCACCAGAGTTCGAGATATTGAAAGGCACTTTGAACCTTATGGAAAGGTTCTCTCAGTTCGAATCCGTCGGAACTTTGCCTTTATTCAATTTGAGACACAAGAAGATGCAACTAAGGCCCTTGAGTGCACTCACATGAGTAAGATTTTAGACAGGGTTGTGTCCGTGGAGTATGCACTTAGGGATGATGATGAGAAGGTTGATCGGCATTATGATAGTCCTAGAAGAGGCTATGGGCGATCGTCAAGTCCGGTTTACCATAGGCGTCCAAGTCCTGATTACGGCCGTCCACGAAGTCCTTTTTATGACAGGTACAATGGCCCGGTCTATGACAGGAGGAGAAGTCCGGGTTATGGAAGGGATGTTAGCCCTGGTTATGGCAGACACAGAAGCCCTGTTTATGGCAGACGCAGGAGCCCTGGTTATGGCAGACCCAGAAGTCCTGAGTATGGGAGATATCGCAGCCGATCACCCATTCGGAGGTCAAGAACTTGA 798 0.4862 MRPVFVGNFDYDTRQSELENLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIHALDNLPFGYDRRRLSVEWARGERGRHRDESNPNQRPTKTLFVINFDPVRTRVRDIERHFEPYGKVLSVRIRRNFAFIQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKVDRHYDSPRRGYGRSSSPVYHRRPSPDYGRPRSPFYDRYNGPVYDRRRSPGYGRDVSPGYGRHRSPVYGRRRSPGYGRPRSPEYGRYRSRSPIRRSRT* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01088 265 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Pte7g01088 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pte7g01088 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Pte7g01088 265 Gene3D - 1 85 IPR012677 -
Pte7g01088 265 CDD RRM2_AtRSp31_like 92 161 - -
Pte7g01088 265 MobiDBLite consensus disorder prediction 168 265 - -
Pte7g01088 265 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 253 - -
Pte7g01088 265 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pte7g01088 265 SMART rrm1_1 92 158 IPR000504 GO:0003723
Pte7g01088 265 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
Pte7g01088 265 Gene3D - 86 173 IPR012677 -
Pte7g01088 265 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Pte7g01088 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 59 IPR000504 GO:0003723
Pte7g01088 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01088 Pte-Chr7 35426829 35429548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01088 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 23.656 1.39e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01088 K12893 - gmx:100797709 413.69