Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01085 ATGGCCTTGGATGTGCTTTCAAACGCTACTTCAGGTCCAGTTGTAGAAGCTATTTCACAGACTGTAGAACACATTCTTGAAACTTTAATCGCTGCTAAAAATGTGCTTGTGAAGAAGGAAAGTTTCAAGGATCTCACAGATTATTTGGAGAGGATTGTACCTATATTGGGTGAGTTAAATAAGAAAACTGTCAACAATTCTGGTAGTATAGACCACATTGTTGACATTCTCAATCGAGAAACTAGGAAAGCGAAACAATTGACCGTGGAATGCTGCAAGAAGAACAAGGTATTTCTTTTGATGAATTGCCGTTCAATAGTTAACCGCTTAGAGGGGATATCTAAAGAGATAAGTAGGGCACTTGATCTGATTCCTTTGATGTCTTTAGAACTTTCCTCCAGTATAATTGAAGACATTAAGAAGCTCTCTGGTAATATGCATAGAGCTGAGTTTAAGGCAGCTATAGCAGAAGAAGAAATTTTGGAGAAAATTGAGTCAGGGATACAGGAAAGGAACATGGACCGGTCGTATGCCAATAACTTGATTAACCTTATTGCAGAAGCTGTTGGTATCTCAACTGAAAGGTCTGCATTGAAGCAGGAATTTGAGGAATTCAAGAATGAGATTGAAAATGCACGTCTTCAGAAAGACCTGGCTGAAGCTATACAGATGGATCAGATTATTGCTCTGTTGGGAAGGGCTGATGCGGTTTCAACCCCAAAGGAAAAGGAAACCAAATATTTCTCCAAGCGTAGATCTTTGGGAAATCAACCATTGGAACCTCTGCACTCTTTTATTTGCCCCATCACCAGGGATGTTATGTTGGATCCTGTTGAAACTTCGTCAGGACATACATTTGAGAGAACTGCAATAGAGAAGTGGTTTGCAGATGGGAATACATCATGCCCCTTGACGTTGACTCCCGTCGACACTTCTGTTTTGCGTCCTAACAAAACTTTGAGGCTGTCAATAGAAGAATGGAAGGATAGGAATACTATGATAACGATTTCTTCAATGAAACAAAAACTTGAGTCTGGGGATGAGGAAGAAATAATTCGTTGTCTGGAACAACTACAAGATTTATGTCAACAAAGAGACCAACACCGGGAATGGATGATATTGGAAGACTACATTTTGGTTCTCATTCCAATTCTTGGTTCCAAAAACCGAGAAGCAAGAAACCGCGTTCTTGCCATCCTTTGCATGTTGGCCAGGGATAGTGATGATGCTAAGGAGCGTATTGCAAAAACTGATAAATCAATTGAGTATATTGTCCTATCCCTTGGGCGGCGTCTAGGGGAAGCAAAGTTAGCAGTGGCTTTACTATTGGAATTATCCAAATATGATTTGGCAAGAGAACAGATTGGAAAGGTTCAAGGCTGTATTTTGTTGTTGGTAACCATATCTAGCAGTGAGGATAATCTAGCTGCAAAAGATGCGACAGAGCTACTGGACAATCTCTCAGTCTCTGATCAGAATGTTCTACAGATGGCAAAGGCCAACTTCTTCAAACATTTGTTGGAGCGTCTATCCTCAGGAACTCAAAATGTGAAAATGATTATGGCCAGAACAGTAGCAGAACTAGAATTAACTGATCGAAATAAAGAATCTTTGATGGATGGTGGAATACTTGTTCCTCTGATGGATTTGCTCAGTGGCAGTGATATTAAGATGAAAACGGTGGCCATTAAGGCTTTACAGAGCCTATCTAGTTTGCCACAAAATGGCCTAAAGATGATTCATGAAGGTGCTGTACGCTCACTACTGGATCTTCTCTTCCTTCATGGCTCATCGAGTTTCCGAAAAGATGTGGCAGTAACAATCAAACAGCTTGCTTTGTCAATCAAGTCTCAGGACGATCAATCACAGGTTTCACTCTTTGAATCTGATGCAGATATTTCGAAGCTCTTCTATTTAATCAACCTGACAGGACATGAAGTGCAAGAAAATATTATTCAGACCTTCTATGCCTTGTGTGAATCCACATCTGCTTCATATATTAAGACAAAGCTCATAGAGTTTTCAGCTATTCAAGTTATGGTTCAGTTATGTGAAAATGGAAACCTTGATGTACGAGCCAATGCTGTAAAGCTGTTTAGTAGCTTGCTGGAGAGTTGCAATGAACCCGTCATTCTCGAGAATGTGGATCGGAAATGCTTGGAAACTTTACTGCAGATAATCAGAAATTCTAATGATGATGAAGAAATAGTCTCAGCATTGACCATAATTACAAGTCTTCCGGAGGTACCTCAGATTACTCAATCGCTTCTGGATGCTGGGGCACTTGCAGTAATTGTTCCTTATCTCCAAGAAAGGAGGCACAATGGTCCTCACAAAAACAAGCTAGTAGACAATGCTGTTGGTGCTCTATACCGTTTCACTGATCCTTCAAATAGAGAATGGCAAAGGGCTGCTGCAGAAACTGGCATTATACCGTTGTTAGTACAGTTGGTGGAGAATGGAACCACCTCTTCAACGAAACAACGGTCTGCCCTAGCTCTTTCTCGATTTTCGCAGAGTTCACAGGTACTGAGCAGGCCGATGCCAAAGCGCAAGGGATTGTGGTGCTTTGCTCCTGGAGAACTAGGTTGCACGGTTCATGGAGGAATTTGTACCATTAAGTCGTCATTTTGTCTTGTGGAGGCTGATGCAGTGTGGCCATTGGTGAAGGCTCTTGGTGAACCAGATCCTGGGGTTTGTGAGGCTGCTTTAGATGCTTTGTTGAGCTTAATTGAAGGTGAAAGACTCCAAACTGGAAGCAAAGTGCTCTCTAAAGAAAATGCCATACCACTTATGATAAGATTGCTGAGTTCCCCTTATCCAAGCTTGCAGGAGAAGGCTCTAAATGCTATAGAAAGAATGTTTAGGCTTCTGGAGTTGAAGGAAACATATGGTACTTCAGCACAAATGTATTTAGTTGATCTTACTCAGCGGGGCAGTGGTAGCACAAGATCTCTGGCGGCTAGAACTCTTGCCCATTTGAATGTTCTCCGTGATCAATCTTCTTTTTTTTGA 3015 0.4133 MALDVLSNATSGPVVEAISQTVEHILETLIAAKNVLVKKESFKDLTDYLERIVPILGELNKKTVNNSGSIDHIVDILNRETRKAKQLTVECCKKNKVFLLMNCRSIVNRLEGISKEISRALDLIPLMSLELSSSIIEDIKKLSGNMHRAEFKAAIAEEEILEKIESGIQERNMDRSYANNLINLIAEAVGISTERSALKQEFEEFKNEIENARLQKDLAEAIQMDQIIALLGRADAVSTPKEKETKYFSKRRSLGNQPLEPLHSFICPITRDVMLDPVETSSGHTFERTAIEKWFADGNTSCPLTLTPVDTSVLRPNKTLRLSIEEWKDRNTMITISSMKQKLESGDEEEIIRCLEQLQDLCQQRDQHREWMILEDYILVLIPILGSKNREARNRVLAILCMLARDSDDAKERIAKTDKSIEYIVLSLGRRLGEAKLAVALLLELSKYDLAREQIGKVQGCILLLVTISSSEDNLAAKDATELLDNLSVSDQNVLQMAKANFFKHLLERLSSGTQNVKMIMARTVAELELTDRNKESLMDGGILVPLMDLLSGSDIKMKTVAIKALQSLSSLPQNGLKMIHEGAVRSLLDLLFLHGSSSFRKDVAVTIKQLALSIKSQDDQSQVSLFESDADISKLFYLINLTGHEVQENIIQTFYALCESTSASYIKTKLIEFSAIQVMVQLCENGNLDVRANAVKLFSSLLESCNEPVILENVDRKCLETLLQIIRNSNDDEEIVSALTIITSLPEVPQITQSLLDAGALAVIVPYLQERRHNGPHKNKLVDNAVGALYRFTDPSNREWQRAAAETGIIPLLVQLVENGTTSSTKQRSALALSRFSQSSQVLSRPMPKRKGLWCFAPGELGCTVHGGICTIKSSFCLVEADAVWPLVKALGEPDPGVCEAALDALLSLIEGERLQTGSKVLSKENAIPLMIRLLSSPYPSLQEKALNAIERMFRLLELKETYGTSAQMYLVDLTQRGSGSTRSLAARTLAHLNVLRDQSSFF* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01085 1004 Gene3D - 617 848 IPR011989 -
Pte7g01085 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1004 - -
Pte7g01085 1004 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pte7g01085 1004 Gene3D - 13 127 IPR036537 GO:0007166
Pte7g01085 1004 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Pte7g01085 1004 SUPERFAMILY ARM repeat 334 994 IPR016024 -
Pte7g01085 1004 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pte7g01085 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 338 IPR013083 -
Pte7g01085 1004 Coils Coil 195 222 - -
Pte7g01085 1004 SMART arm_5 749 795 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 664 704 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 871 912 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 572 613 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 798 839 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 531 571 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 707 745 IPR000225 GO:0005515
Pte7g01085 1004 SMART arm_5 916 956 IPR000225 GO:0005515
Pte7g01085 1004 Gene3D - 434 616 IPR011989 -
Pte7g01085 1004 Coils Coil 139 159 - -
Pte7g01085 1004 Gene3D - 339 431 IPR011989 -
Pte7g01085 1004 CDD RING-Ubox_PUB 265 314 IPR045210 -
Pte7g01085 1004 Gene3D - 871 1002 IPR011989 -
Pte7g01085 1004 SUPERFAMILY RING/U-box 253 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01085 Pte-Chr7 35408747 35416044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01085 264 1004 U-box Gene Family AT1G76390 28.061 3.14e-60 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01085 - - qsa:O6P43_027410 1315.06