Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01052 ATGGGAGGCTGCTGCTGTTCTGCCAGAAAAGCTCATTTCCATGGAACGCCTTTATATTACTATTGTCCACCAAGACTCGAAGTGCGAGATTCCTTGACTTCTAATGATGGTACTGCCTCTTCATTCACTGCAAGACTGTTGGTAGGCTTGGATCTGGAAACATCAATACCTGATACGTATCGACCCCCTCCTACTCCTTTACCGTATGATGTGGACATGCGGTGTCTACCATTGACAAATCCTGATCCTGGTGGAGAAACAATTGGTGGTGTTAGTCTGGAAAGCTTAATGGCATGTGACGAAATTGAGCAACTGGAATCCAAATCTAAAGCTAATTCTTTACTTTCTCCAACAAAGTTTGAACAATCAAAATCAAATGAAACTTCTGTACTACAAGTTGATGAAGAGGATGTCTGTCCCATTTGCCTTGAAGAATACAATGTGGAAAATCCAAAAAATGTGACTAAGTGTGAGCATCACTTTCATTTATCATGTATACTGGATTGGATGGAAAGAAGTGACTCATGTCCCATTTGTGATCAGGTGTGCTTTTTGCTATGA 561 0.41 MGGCCCSARKAHFHGTPLYYYCPPRLEVRDSLTSNDGTASSFTARLLVGLDLETSIPDTYRPPPTPLPYDVDMRCLPLTNPDPGGETIGGVSLESLMACDEIEQLESKSKANSLLSPTKFEQSKSNETSVLQVDEEDVCPICLEEYNVENPKNVTKCEHHFHLSCILDWMERSDSCPICDQVCFLL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01052 186 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Pte7g01052 186 Pfam Ring finger domain 138 179 IPR001841 -
Pte7g01052 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Pte7g01052 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 184 IPR013083 -
Pte7g01052 186 SUPERFAMILY RING/U-box 131 184 - -
Pte7g01052 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 183 - -
Pte7g01052 186 SMART ring_2 139 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01052 Pte-Chr7 35171776 35175917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01052 1 181 C3H Transcription Factor Family AT4G00335 48.901 2.30e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01052 - - gmx:100792561 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte7g01052 7 35171776 35175917 Pte7g01052 7 35171776 35175917 RCT