Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g01005 ATGGTGAGGAGGAAGACTCAGATGAAGCGGATAGAGAACGCAACAAGCAGGCAAGTGACCTTCTCAAAGAGACGTAGCGGGCTCTTAAAGAAGGCGTTTGAGTTGTCAGTACTTTGTGATGCTGACGTTGCTCTCATAATATTCTCGTCAAGAGGAAAGCTCTATGAATTCTCAAGCTCCTGTATGCAGAGTATTATAGAACGTTATAGAAGGCATACGAAAGATACTCATACACCTCACATGTCAAATGAACCCAATTTGGAGCATTTAAAGGAAGAAGCTGCTTACATCAAATCGAAGATCGAGTTGCTTGAAGTTTCCAAAAGAAAATTCTTGGGAGAAGGTTTAGGACCATGTTCTGCTGAAGAACTGCAACAGCTAGAACAAGAACTGAGGAGGAGTGTAAGCAAAGTTCGAGCAAGAAAGACTGATGTTTACAAGGAACAAATGGAGAAACTTAAAGAAATGGAGAAATCTCTAGCAACTGAGAATGAAAGGCTTCTAGATAAGCGTGATATTCAGATGTCACAGTCTTTGCATCAGCCGCAAAGGAACACGCACCATGCAGACAGTAATTCAATTTCAGACGTGGAGACTGATTTATTCATAGGATTGCCAGAAACAAGAGCAAGACGCTTCACAAGTACTTAG 651 0.4147 MVRRKTQMKRIENATSRQVTFSKRRSGLLKKAFELSVLCDADVALIIFSSRGKLYEFSSSCMQSIIERYRRHTKDTHTPHMSNEPNLEHLKEEAAYIKSKIELLEVSKRKFLGEGLGPCSAEELQQLEQELRRSVSKVRARKTDVYKEQMEKLKEMEKSLATENERLLDKRDIQMSQSLHQPQRNTHHADSNSISDVETDLFIGLPETRARRFTST* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g01005 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 Coils Coil 121 141 - -
Pte7g01005 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pte7g01005 216 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte7g01005 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Pte7g01005 216 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte7g01005 216 Coils Coil 146 170 - -
Pte7g01005 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pte7g01005 216 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte7g01005 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte7g01005 216 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g01005 Pte-Chr7 34748071 34755947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g01005 1 155 MADS-box Gene Family AT2G45660 70.323 1.22e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte7g01005 K-box 7.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g01005 - - cave:132186361 269.24