Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00977 ATGAGACCAACTCCAATTGTTGCGTCAGTTCAATCCTTCATACACTTGACTCCAAGAGAGCTATCATCTTCAACATCATCAGAAAGTAATTACTCACACAATTCCAGGCTGAGGAATTACAGTACTTCTGGTAGTACTGAAGCAAATTTAGTTTTAGTTATCGTACTCCTCTTGTGTGCACTAGTATGTGCTCTAGCTCTCAACTGCGCCATTCGATTCTTCTTACATGGGTGCAATATTCCATTTAGCTCTTCTCCAAGCACACGACAGCAGCAGCAGAAGACGAGTTGTGCAGAGGTTGATGCAGCTGATGTGGTTAAAGCTACTGCTACTCCAATGGCGTTCTCATCAGTTGGGACAGAGGTTGAGTGTGCAATTTGTTTATCTGAGTTTGCAGAGGGTGAGGAAATCCAGGTGCTGAGAAGGTGTAAGCATAGTTTTCACTTGCAATGTATTGAGAGGTGGTTGAATTCAAAGTCCTCATGTCCTACTTGTCGTTGCAGCTTGAAATCTCCATAG 519 0.4316 MRPTPIVASVQSFIHLTPRELSSSTSSESNYSHNSRLRNYSTSGSTEANLVLVIVLLLCALVCALALNCAIRFFLHGCNIPFSSSPSTRQQQQKTSCAEVDAADVVKATATPMAFSSVGTEVECAICLSEFAEGEEIQVLRRCKHSFHLQCIERWLNSKSSCPTCRCSLKSP* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00977 172 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Pte7g00977 172 SUPERFAMILY RING/U-box 120 170 - -
Pte7g00977 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 172 IPR013083 -
Pte7g00977 172 SMART ring_2 124 165 IPR001841 -
Pte7g00977 172 Pfam Ring finger domain 123 166 IPR001841 -
Pte7g00977 172 PANTHER RING-H2 FINGER PROTEIN ATL78 26 169 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00977 Pte-Chr7 34414400 34415386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00977 23 171 C3H Transcription Factor Family AT5G47610 40.523 1.82e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00977 - K19040 qsa:O6P43_029405 128.642