Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00903 ATGGCAGAAGAAGAAAATCCTGAAGCTGATGTCATAGCCTTGTCTCCCAAGACCCTTATGGCAACTAACAGATTCTTGTGTGAAATCTGTGGGAAGGGCTTCCAAAGGGATCAGAATCTTCAACTTCATCGCCGTGGACACAATCTCCCATGGAAGCTCAAGCAAAGGACTAGCAAAGAAATAAAAAAACGTGTGTATGTTTGCCCAGAGAAGACTTGTGTTCACCACCATCCTTCAAGGGCACTCGGAGACCTAACGGGTATCAAAAAGCACTTCTGTAGAAAACATGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGCGCTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAGACATGTGGTACCAGAGAATACAAATGCGATTGTGGGACAATATTTTCACGAAGAGATAGCTTTATCACTCACAGGGCCTTCTGCGATGCCTTAGCTGAAGAAACAGCTAGACTAAATGCAGCATCCAACATGAACAACACATTAGTTGCCAATATGAATTACAGTGTTATGGGAACATCGCTAGGGCCTAGTATGGAAGCAAATTTTCCATCCATCTTCAATCCAATTTCGAACAATAATGAAACTTGTAATCAAAATGGAGGACTTTCTTTGTGGATGGGTCAAGGATCTTATCAAGTTCATGATATAATAAGCAATCGCCATGTACATGATATTCATCATCAGCTAGGACCAGCAGCTGCCACCAATGAGGCAATGTATGGGAATCCACTAGTTTCGTGCACCGATCCTCCACCAACTGACTATCAAAACTGGGTGTTCGGAAATAAGCTTTCCTCAAGTCACACTGAAGAGCTGACAAACACTTCACTTCCTCTGAGTCATAATATTGTGAAAGATGCAGCTGGAAATCAACTGATCAGTGTTCCTTCCTTGTATAGCTCTCAACATCAATCTCATCAACCATCTTCAGCAAACATGTCAGCCACTGCTTTGTTACAAAAGGCTGCTCAAATTAGTGCAACTTCATCTGATTCCTCATTCTTGAGCAGCTTTGGTTTGAAATGCAGTAATAGTCAAGTTAAAGACGGGCACAAGTACAGTGGAACATATGGCTCAAACTCAGTGATCACTAGCCTTGGAAGTGACCTAGAAAACTCAGCTTGTGATGATTTGTCACGAATGCACTATGTGAAACGTCGCCGCATTCAGACTGAGGAGAGTGCAGGAGGGCAAACAAGGGATTTTCTTGGTGTTGGCGTGCAAACCCTTTGTCACCCTACATCAATCAACGGATGGATTTGA 1287 0.4305 MAEEENPEADVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARLNAASNMNNTLVANMNYSVMGTSLGPSMEANFPSIFNPISNNNETCNQNGGLSLWMGQGSYQVHDIISNRHVHDIHHQLGPAAATNEAMYGNPLVSCTDPPPTDYQNWVFGNKLSSSHTEELTNTSLPLSHNIVKDAAGNQLISVPSLYSSQHQSHQPSSANMSATALLQKAAQISATSSDSSFLSSFGLKCSNSQVKDGHKYSGTYGSNSVITSLGSDLENSACDDLSRMHYVKRRRIQTEESAGGQTRDFLGVGVQTLCHPTSINGWI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00903 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 47 IPR013087 -
Pte7g00903 428 Pfam Zinc finger, C2H2 type 26 47 IPR013087 -
Pte7g00903 428 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 416 IPR031140 -
Pte7g00903 428 SUPERFAMILY beta-beta-alpha zinc fingers 24 121 IPR036236 -
Pte7g00903 428 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Pte7g00903 428 FunFam protein indeterminate-domain 5, chloroplastic-like 79 158 - -
Pte7g00903 428 SMART c2h2final6 25 47 IPR013087 -
Pte7g00903 428 SMART c2h2final6 101 121 IPR013087 -
Pte7g00903 428 Gene3D Classic Zinc Finger 21 48 - -
Pte7g00903 428 Gene3D Classic Zinc Finger 58 149 - -
Pte7g00903 428 FunFam protein indeterminate-domain 12-like 4 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00903 Pte-Chr7 33485766 33488153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00903 6 429 IDZ Gene Family AT1G03840 53.623 1.17e-149 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte7g00903 zf-C2H2 0.014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00903 K25870 - qsu:112011855 622.083