Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00868 ATGGACTCCGAGGACGATATGCACGATGCCCATGATGTCGAGTCTGTTGATGACGATTTCTACAGTGGTGAAGCTGACGACGCTCCCATGGATTACTACAGTGACTATACCGATGACGCCGATGATTACTTTGATAATGCTGATGATTCAGATACAGCTGAGTATGGTAGATTGGAGCAAAATTATGCGATTCTGAAGGAATCAGATATACGGGTGCTCCAAGAGGAAGATATCAGTCGAGTTTCAACAGTTCTTTCTATTTCTCGAGTGGTTGCCAGCATTTTACTTCGGCACTATAATTGGAGTGTCAGTAAAGTACATGATGCATGGTTTGCTGATGAAGAACGAGTAAGAAAACAAGTTGGATTGTTGGACAAACCGGTCCTGCAGTTCCTTAGAGCTAGAGAACTTACATGTGGAATATGTTTTGAAACATATCCTCGTTCTCAGACTGAATCTGCTGCCTGTGGTCATCCATATTGCACTAATTGCTGGGAAGGGTACATCAGCACTTCCATTAATGATGGTCCTGGCTGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGACATGGTGAATCTAATGACATCTGAGGAAGATAAAGAGAAATATTCCCGTTACCTCCTTAGATCCTACATTGAAGACAACAAGAAGACTAAGTGGTGTCCTGCTCCCGGTTGTGAGTATGCTGTTAACTTTGATGCTGGCGTTGGAAATTATGATGTTTCTTGCCTCTGTTCATTTTGCTTTTGCTGGAATTGTACAGAGGAGGCTCATCGTCCAGTAGACTGCAGTACTGTGGCCAAATGGATTTTAAAGAATAGTGCAGAATCTGAAAACATGAACTGGATTCTTGCCAACTCCAAACCTTGTCCCAAATGCAAGCGGCCAATTGAGAAGAACCAAGGGTGCATGCACATGACATGCACACCACCTTGTAAATTTGAATTTTGCTGGCTTTGCCTTGGTGCATGGTCAGATCATGGGGAAAGGACTGGTGGTTTCTATGCTTGCAACCGATATGAAGCAGCTAGACAGGAAGGAGTGTATGATGAGGCTGAGAGGAGAAGAGATATGGCCAAAAATTCTTTGGAGAGGTATACTCACTATTATGAGCGTTGGGCAAGCAATCAATTGTCAAGGCAAACAGCTCTAGCTGATTTGCATCAAATGCAAACTGTACATATTGAGAAACTTAGTGATATACAATGTCAACCTGAGTCTCAACTCAAGTTTATAACTGAAGCATGGCAACAGATAGTTGAGTGTAGGCGTGTGCTGAAATGGACTTATGCATATGGCTACTACCTACCTGAACACGAGCATGCGAGAAAGCAGTTTTTTGAGTACTTGCAAGGGGAGGCAGAATCTGGTTTGGAAAGGCTTCATCAATGTGCAGAGAAGGAGTTGCAACAATTTCTCAGTGGTGAGGGTCCATCCAAGGAATTCAATGACTTCCGGACAAAGCTGGCAGGATTAACCAGCGTGACTAGAAATTACTTCGAAAATCTGGTTAGGGCTTTGGAGAATGGCCTTTCAGATGTGGACTGTCATGGAGCTGCTTCAAGCAAGACAATTTGCTCAAAGAATGTCGGAGGGACCAGCAAGGGCAAAGTGTATAATATTACTATTGTACAATTTCTCACATTCCTGGCAGACAAAGCCGGTTTGCTTTACAGTACAAAAAATGAAAATGGTGGATTTCGCTGA 1728 0.4334 MDSEDDMHDAHDVESVDDDFYSGEADDAPMDYYSDYTDDADDYFDNADDSDTAEYGRLEQNYAILKESDIRVLQEEDISRVSTVLSISRVVASILLRHYNWSVSKVHDAWFADEERVRKQVGLLDKPVLQFLRARELTCGICFETYPRSQTESAACGHPYCTNCWEGYISTSINDGPGCLMLRCPDPTCGAAVGQDMVNLMTSEEDKEKYSRYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGVGNYDVSCLCSFCFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAARQEGVYDEAERRRDMAKNSLERYTHYYERWASNQLSRQTALADLHQMQTVHIEKLSDIQCQPESQLKFITEAWQQIVECRRVLKWTYAYGYYLPEHEHARKQFFEYLQGEAESGLERLHQCAEKELQQFLSGEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDCHGAASSKTICSKNVGGTSKGKVYNITIVQFLTFLADKAGLLYSTKNENGGFR* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00868 575 SMART ibrneu5 208 270 IPR002867 GO:0008270
Pte7g00868 575 SMART ibrneu5 274 344 IPR002867 GO:0008270
Pte7g00868 575 SUPERFAMILY RING/U-box 289 337 - -
Pte7g00868 575 MobiDBLite consensus disorder prediction 1 32 - -
Pte7g00868 575 CDD BRcat_RBR_ANKIB1 215 279 - -
Pte7g00868 575 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 436 IPR031127 GO:0004842|GO:0016567
Pte7g00868 575 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Pte7g00868 575 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Pte7g00868 575 Pfam Ariadne domain 357 518 IPR045840 -
Pte7g00868 575 CDD Rcat_RBR_ARI7-like 293 347 - -
Pte7g00868 575 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Pte7g00868 575 SUPERFAMILY RING/U-box 136 220 - -
Pte7g00868 575 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Pte7g00868 575 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Pte7g00868 575 Coils Coil 349 369 - -
Pte7g00868 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 220 IPR013083 -
Pte7g00868 575 CDD RING-HC_ARI6-like 136 197 - -
Pte7g00868 575 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Pte7g00868 575 MobiDBLite consensus disorder prediction 1 18 - -
Pte7g00868 575 SUPERFAMILY RING/U-box 208 277 - -
Pte7g00868 575 Gene3D - 266 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00868 Pte-Chr7 32927818 32933138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00868 16 543 ARIADNE family AT1G65430 71.455 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00868 K11968 - qsa:O6P43_028117 990.719