Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00823 ATGAAGATTCTCTCAGGTCTTCTTGTTTTCAATCCTATGTGGCAGTACAGACATTTTATTTTTTGTGCTTTTCAGGGAATCGATAATAAGATTCTTTCCTTAAACTTCAAAGAGTACAAGGCCGAGATAAAGACTGCTGATGCCCAGAAATCTCATAAAGAAGGAGTCACTGTGTTGGTGACAGGATGTTTAATAGGCAAGGATAACTTGAGAAGAAAATTTGCCCAGTCGTTCTTTCTGGCTCCACAAGACAATGGCTATTTTGTCCTTAATGATGTCTTTAGGTATGTTGAAGACTCAGAACCCTTGGAGATACATTCAGTTAATGGAGTTAATACAATAACCTCAGAAACAGAGAATGTTAATGTTACCCACACTCCACCAGATCCGATAAATTCACATGTGGTTGAAGGTCAAAATGTTGTTGAGAACGTATACCAGTCATCTGATCAAGAGAGTCAGCTGACTAATGAAAATGAGCCAATTCTTGAAATGCATTCTCATCCTATTGGGACTGAAGCTTCTGAAACTCCAGAATTGTCCTCTTCATCTCTGGAAGATGCTCCAAAGAAATCTTACGCATCAATTGTGAAAGTGGCTAAGGGAAGCTCGGGGCCAACAAGAGTATATGTACCTACGAAAACTGTAAAGGTGGATACGAAGAAAATGGAGAACCTGTCAGTTGAATCAGTAAACAACGACATGCCTGAGACGTCATTGGTTAATGTTGAGATGCCCGAGAGAAACAATAATCACGAGGAAGTTGAGGGCTACTCCATCTACATCCGAAATCTACCTTTACATGTAACAGTTGCTCAATTGGAGGCTGAATTTAAGAAATTTGGACCTATCAAGCAAGATGGTATCCAAGTCAGAAATAACAAGCAACAGGGTTATTGTTTTGGCTTTGTTGAATTCGAGTCTTTGAGTTCAATGAATAAGGCACTTCAGGCTTCACCGGTCACAATTGGGGGTCGTGATGCAGTAGTTGAGATCAAAAGAACCACCACTCGAGTTGGAAGTAGCAACGTAGGAAGAGGTAGATTCTTGTCTGGAAGTGGTGGATATAGAACTGACAATTTCAGGCCTCGTAGAGCTGGAAACTATGGCGGTGGTGCTATAAGGGGCTATGTCAGACAAGAATACGGGAATTTGGGGTGA 1161 0.41 MKILSGLLVFNPMWQYRHFIFCAFQGIDNKILSLNFKEYKAEIKTADAQKSHKEGVTVLVTGCLIGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDSEPLEIHSVNGVNTITSETENVNVTHTPPDPINSHVVEGQNVVENVYQSSDQESQLTNENEPILEMHSHPIGTEASETPELSSSSLEDAPKKSYASIVKVAKGSSGPTRVYVPTKTVKVDTKKMENLSVESVNNDMPETSLVNVEMPERNNNHEEVEGYSIYIRNLPLHVTVAQLEAEFKKFGPIKQDGIQVRNNKQQGYCFGFVEFESLSSMNKALQASPVTIGGRDAVVEIKRTTTRVGSSNVGRGRFLSGSGGYRTDNFRPRRAGNYGGGAIRGYVRQEYGNLG* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00823 386 CDD RRM_SF 260 326 - -
Pte7g00823 386 Gene3D - 15 100 - -
Pte7g00823 386 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 23 380 IPR039539 -
Pte7g00823 386 CDD NTF2 25 98 IPR018222 -
Pte7g00823 386 ProSiteProfiles Nuclear transport factor 2 domain profile. 1 96 IPR018222 -
Pte7g00823 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 335 IPR000504 GO:0003723
Pte7g00823 386 Pfam Nuclear transport factor 2 (NTF2) domain 24 96 IPR002075 -
Pte7g00823 386 SMART rrm1_1 259 331 IPR000504 GO:0003723
Pte7g00823 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 318 IPR000504 GO:0003723
Pte7g00823 386 SUPERFAMILY RNA-binding domain, RBD 243 360 IPR035979 GO:0003676
Pte7g00823 386 Gene3D - 233 379 IPR012677 -
Pte7g00823 386 SUPERFAMILY NTF2-like 21 97 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00823 Pte-Chr7 32150814 32154039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00823 178 323 Eukaryotic Initiation Factors Gene Family AT2G36660 28.859 2.53e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00823 K24983 - qsa:O6P43_009157 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte7g00823 7 32150814 32154039 Pte7g00823 7 32150814 32154039 RCT