Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00807 ATGGGAAGGGGAAGAGTTGAGTTGAAGAGGATAGAAAACAAGATAAACAGGCAGGTTACTTTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAAGCCTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCCCTCATTATCTTCTCTAACCGTGGAAAGCTTTACGAGTTCTGTAGCAGCCCCAGCATGCTCAAAACGCTGGAAAGGTACCATAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAATAAACCTGCCAAAGAACTTGAGCAGACAAGCTATCGTGAGTATGTGAAACTGAAAACAAGGTTTGAGTCCCTTCAAAGAACCCAAAGAAACCTTCTTGGTGAAGATTTAGGTCCACTGAACACCAAAGACCTTGAGCAGCTTGAGCGTCAGCTAGAGGCATCCTTGAAGCAAGTGAGGTCCACAAAGACTCAGTTCATGCTGGACCAGCTTTCTGATCTGCAGAACAAGGAGCAACTTTTAATAGAAGCCAACAGAGCTCTGAGTATAAAGCTTGATGAAATTAATACCAGGCATCACCTTCGTCAATCATGGGAAGCAGCTGGAGATCAAAGAATGTCATTTGCTCCACAGAGTGCTCAAACTCAAGGCTTCAGCTTCCAGCCTTTAGACTGCAATCCCACATTGCAAATAGGGTACAATGCTGTGGCATCCGATCAGATGACTACAACATCTCATGTTCCACAAGTGAGTGGCTTCATACCCGGATGGATGCTTTGA 744 0.4476 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLERYHKCSYGAVEVSNKPAKELEQTSYREYVKLKTRFESLQRTQRNLLGEDLGPLNTKDLEQLERQLEASLKQVRSTKTQFMLDQLSDLQNKEQLLIEANRALSIKLDEINTRHHLRQSWEAAGDQRMSFAPQSAQTQGFSFQPLDCNPTLQIGYNAVASDQMTTTSHVPQVSGFIPGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00807 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pte7g00807 247 FunFam MADS-box transcription factor 1 13 87 - -
Pte7g00807 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte7g00807 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte7g00807 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte7g00807 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte7g00807 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte7g00807 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte7g00807 247 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte7g00807 247 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Pte7g00807 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte7g00807 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pte7g00807 247 Coils Coil 123 146 - -
Pte7g00807 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Pte7g00807 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00807 Pte-Chr7 31555418 31560856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00807 1 248 MADS-box Gene Family AT5G15800 68.302 3.20e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte7g00807 K-box 9.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00807 K09264 - zju:107416438 410.223