Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00786 ATGTCTGAGACCTCAACCTCACACCTAGCTCACCGTCTCAACCTTGAACACGAATCTCAATCCAACCCAGATGAGCATTATCCAGATTCTCCAACCCTTGATTCCCTCGCTCATCTCTGCCCAGATGAATTCCTCTCAAACCCTTTTTCTACAACCTCCTCCTATTCTAACCCACACTCTGCGGCTGCTACGCATGATTCTCCGACCCAATGTTCCAACTTCATCTCCAATTGGGATTTAAATTCAGATTCGTATTCGTATTCAGATTCTGATTCTGTCAACTGCTTTCTGACCGATCTCTTTGATAACAGGTCAAGCCAACAGCTTGATGATTTCTCCGATGCCAGTTCGTATATCAACCCCTTCTCTGAGGTGGGTTTCGAGGCGCATGACGTGAGTAGTGGGTTAGGGTTTGGTGGAGTGGGACCCAGCCAGCGTAATTCAAGTGTGAATGGTCTTCGGGTTACCGGGTTTGACTCGGATTCGGATTCAGCTTCAGGGGGTGCTGGTGAGGTTGATAGGGAGGTTGAATTCAATGATTGGGGAAACGAAAATGGTGGGTTTGATGTTTCAGATATGGGTTTGTGTTTGGACAACCTGATCTTGGAAAATCAGAGGACAATGCGTGATAATCTTGAGTGGGAGGGACTGGAGGAGAGAGAAGATATAAGTGTGGTGATTGATGAGGTTGAAGATTTATCAGCTACATCTGGGTTTTCATATGGAGACGATGAGGCAGGTGAAGACGCATGGAGATATCTAGAGTGGCAAATTCTGTTGGCAATTAATAATCTAGGACAGGACACAAATGTGGATGATGATGCCGTCGATTCAGCTGTTGATGTCCAAGTATCTGCTATTAATTATGAAGCCATTTTTGAAGTAGACAGTGAAGTTAGTTTCAAGATTAATCCCCCTGCATCCAAAGTTATTGTCGAGAATCTGCCATTGGTAGAGCTGACAATGGAAGATATGCAGAACATTTCTACTTGTGCAATTTGCAAAGATGAGGTACTTGTGGAGGAGAAGTTGACGAGGCTTCCTTGTTTGCATTATTATCATGGAGAGTGTATTATTCCTTGGTTAAGTATCCACAATACATGCCCTCTTTGTCGGTCTGAATTGCCTACAGATGATCCTGATTATGAGCGGAGGAAAATTCAGAGATCAATTCGAAACCTATCTGGATTTACTGGGCAAGCTGGGAACAGAGGCAGGAGTGGAATGTATAACTACATATAA 1242 0.4404 MSETSTSHLAHRLNLEHESQSNPDEHYPDSPTLDSLAHLCPDEFLSNPFSTTSSYSNPHSAAATHDSPTQCSNFISNWDLNSDSYSYSDSDSVNCFLTDLFDNRSSQQLDDFSDASSYINPFSEVGFEAHDVSSGLGFGGVGPSQRNSSVNGLRVTGFDSDSDSASGGAGEVDREVEFNDWGNENGGFDVSDMGLCLDNLILENQRTMRDNLEWEGLEEREDISVVIDEVEDLSATSGFSYGDDEAGEDAWRYLEWQILLAINNLGQDTNVDDDAVDSAVDVQVSAINYEAIFEVDSEVSFKINPPASKVIVENLPLVELTMEDMQNISTCAICKDEVLVEEKLTRLPCLHYYHGECIIPWLSIHNTCPLCRSELPTDDPDYERRKIQRSIRNLSGFTGQAGNRGRSGMYNYI* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00786 413 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Pte7g00786 413 MobiDBLite consensus disorder prediction 1 33 - -
Pte7g00786 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 182 376 - -
Pte7g00786 413 MobiDBLite consensus disorder prediction 149 172 - -
Pte7g00786 413 SUPERFAMILY RING/U-box 312 379 - -
Pte7g00786 413 SMART ring_2 331 371 IPR001841 -
Pte7g00786 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 378 IPR013083 -
Pte7g00786 413 MobiDBLite consensus disorder prediction 149 163 - -
Pte7g00786 413 MobiDBLite consensus disorder prediction 10 24 - -
Pte7g00786 413 FunFam E3 ubiquitin-protein ligase RNF181 295 378 - -
Pte7g00786 413 Pfam Ring finger domain 330 372 IPR001841 -
Pte7g00786 413 CDD RING-H2_PA-TM-RING 330 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00786 Pte-Chr7 31209987 31212650 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00786 136 386 C3H Transcription Factor Family AT3G02340 36.029 6.86e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00786 - - qsa:O6P43_004343 299.671