Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00620 ATGAATCCGAGTAAAGGGAAGGGATCTATGTCAACGGCTTGTTCTGGTTCTACTTGGAAATCTGCTGAGACGGTGTCTGACGAGTTTCCAGTTGGTTTGCGGGTGCTGGTTGTCGATGATGATCCCACTTGCTTAATGATCTTAGAGAAGATGCTCAGGACTTGTCTTTACGAAGTTACCAAATGCAATCGAGCGGAGTTAGCTTTGCAAATTCTTAGACAGAACAAAAATGGGTTTGATATTGTGATAAGTGATGTACATATGCCAGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGATTGGAAATGGACTTGCCAGTTATAATGATGTCAGCAGATGAAAGTAAAAGTGTTGTCATGAACGGTGTAACTCATGGTGCTTGTGATTACCTGATAAAACCCGTCCGCATTGAGGCTTTGAAGAATATATGGCAGCATGTTATTCGAAAGAAGAAGAATGAAGGGAAGGACTTGGAGCAAAGCAGTGCTGAGGAAGATCGGCAGCCAAAACCTTCTGAAGATGCAGATTACTCATCCTCAGCGAATGAAGGAAGTTGGAGAAATGCAAAGAAGAGGAAAGATGAAGAAGAAGATGCTGAGGAAAAGGACGATACATCGACATTGAAAAAGCCACGTGTTGTTTGGTCTGTGGAACTTCATCAACAATTCGTTGCAGCTGTTGAACAGCTGGGAATCGATAAGGCTGTTCCCAAAAAAATTCTGGAGTTAATGAATGTTCCTGGGCTCACCAGGGAAAATGTTGCTAGCCACCTCCAGAAATATCGCTTGTACCTTCGAAGGTTACATGGCAATCCCCACCAGAGTATCTTGAATAATTCTTTCATGAGTCAACAAGAGGCGACATTTGGGCAGATGTCTCCACTCAATGGTCTTGATCTTCAAACACTCGCTGCAACAGGTCAGCTCCCTGCTCAAAGTCTTGCTACGCTGCAAGCTGCAGGACTCACTAGGACAACAACAAAACCTGGTGTGCATGTGCCTCTCGAGCAAAGGAATTTATTCAGCTTTGAAAATCCCAAATAA 1047 0.4346 MNPSKGKGSMSTACSGSTWKSAETVSDEFPVGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAELALQILRQNKNGFDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADESKSVVMNGVTHGACDYLIKPVRIEALKNIWQHVIRKKKNEGKDLEQSSAEEDRQPKPSEDADYSSSANEGSWRNAKKRKDEEEDAEEKDDTSTLKKPRVVWSVELHQQFVAAVEQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLHGNPHQSILNNSFMSQQEATFGQMSPLNGLDLQTLAATGQLPAQSLATLQAAGLTRTTTKPGVHVPLEQRNLFSFENPK* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00620 348 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Pte7g00620 348 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Pte7g00620 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 267 IPR017930 -
Pte7g00620 348 CDD REC_typeB_ARR-like 35 149 - -
Pte7g00620 348 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Pte7g00620 348 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 285 IPR045279 GO:0009736
Pte7g00620 348 SUPERFAMILY CheY-like 32 156 IPR011006 -
Pte7g00620 348 Gene3D - 33 170 - -
Pte7g00620 348 Gene3D - 208 270 - -
Pte7g00620 348 MobiDBLite consensus disorder prediction 155 174 - -
Pte7g00620 348 PIRSF RR_ARR_type-B 13 348 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte7g00620 348 SMART REC_2 33 145 IPR001789 GO:0000160
Pte7g00620 348 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Pte7g00620 348 FunFam Two-component response regulator 33 170 - -
Pte7g00620 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Pte7g00620 348 MobiDBLite consensus disorder prediction 187 208 - -
Pte7g00620 348 FunFam Two-component response regulator 207 270 - -
Pte7g00620 348 MobiDBLite consensus disorder prediction 155 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00620 Pte-Chr7 20264598 20266904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00620 67 348 Response Regulator Gene Family AT3G16857 66.990 1.21e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte7g00620 Response_reg 7.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00620 - K14491 tcc:18603588 562.377