Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00550 ATGCTTCCTATCACCTGCATTCTCATAATATGCCTCTTGAGTTCTTTCTCTCCTGTCAAACCTGCTGTCAATTTCACCCTCCCTCACCAACATCCTTACCCTGAAGCTGTTGTTCAAGATGTTCAAAGAAGAGTCAATGACTCTGTATCAAGGCGAAACCTGCTTTCCCTTCAAGTAAAGGACCAGGCTTGCCTTACCGGGAACCCCATTGACGATTGTTGGCGTTGTGACCCAAATTGGGGGGCAAACCGTCAAAGGCTCGCAGACTGCGGCATCGGTTTCGGTGGTGACGCCATGGGAGGCAAAGGTGGGCAGATCTACATAGTCACGGACTCTTCTGATAACGACCCGGCAAACCCAACACCCGGTACGCTCCGGTTCGCTGTTATACAAGACGTACCACTCTGGATCATATTCTCAACTTCCATGACCATAACTCTCAGACACGAACTCATTTTCAACAGCTTCAAAACCGTCGATGGCCGTGGAGCTGACGTCCATATAGTTGGCAATGGCTGTGTAACCCTTCAATACGTCTCCAACGTCATCATCCATGGTATCCACATCCACCATTGCAGACCTTCTGGTAACACAATCATCCGCTCCAGCCCCACTCATGTGGGTTGGAGAGGAAGATCAGACGGTGATGGCATATCCATATTCGGGTCAACAAAAATATGGATCGACCATTGCACGCTGTCATACTGTACCGATGGACTGATCGATGCTATCATGGGGTCCACGGGTATCACAATATCAAACAACCATTTCTCTCACCACGACGAGGTGATGTTGTTGGGTCATGATGATAGGTACGAACCGGATTCGGGTATGCAGGTAACCATTGCGTTTAATCACTTCGGTGAAGCGCTGGTGCAGCGTATGCCGCGGTGTAGAAGAGGTTACATACACGTGGTCAACAATGATTTCACACAGTGGCAGATGTATGCCATCGGTGGCAGCGCTAATCCCACCATTAACAGTCAGGGTAATAGGTATACTGCACCAGGGGACCCTAATGCGAAAGAGGTGACTAAGCGCGTGGATACTGATGAGACTGACTGGGCCGGTTGGAATTGGAGGACAGAAGGGGATATGATGGTGAATGGAGCCTTCTTCGTGCCTTCAGGTGAAGGGCTGAGTACTCAGTATGCCAAGGCTTCCAGTGTTGAACCAAAATCTGCTGTTCTAATTGACCAGCTCACAGCGAATGCCGGTGTCTTTGGTGATCCCAGGGATGACAGTGGGGACATGCCATTCCCTGGAGGCGGCAGTGGGGTCGTCACCGGTGCTAACAGCAACACTAGGGGGTCCAGTGGCGGGGATGGTGGTGACTTGTTTGGAATGATATTCCATGGTGGAATCAACTCAGCAGCTCCACCCTCCCTATCCAAATTTTCAATCTTCTCTTTTTTAATTACTTTAATTTTTTATAGTATGACCAACCATGTTTCATTAACATTACAGTTATCATCATGA 1479 0.4895 MLPITCILIICLLSSFSPVKPAVNFTLPHQHPYPEAVVQDVQRRVNDSVSRRNLLSLQVKDQACLTGNPIDDCWRCDPNWGANRQRLADCGIGFGGDAMGGKGGQIYIVTDSSDNDPANPTPGTLRFAVIQDVPLWIIFSTSMTITLRHELIFNSFKTVDGRGADVHIVGNGCVTLQYVSNVIIHGIHIHHCRPSGNTIIRSSPTHVGWRGRSDGDGISIFGSTKIWIDHCTLSYCTDGLIDAIMGSTGITISNNHFSHHDEVMLLGHDDRYEPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPGDPNAKEVTKRVDTDETDWAGWNWRTEGDMMVNGAFFVPSGEGLSTQYAKASSVEPKSAVLIDQLTANAGVFGDPRDDSGDMPFPGGGSGVVTGANSNTRGSSGGDGGDLFGMIFHGGINSAAPPSLSKFSIFSFLITLIFYSMTNHVSLTLQLSS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00550 492 SMART amb_all 142 339 IPR002022 -
Pte7g00550 492 FunFam Pectate lyase 67 409 - -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Pte7g00550 492 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Pte7g00550 492 SUPERFAMILY Pectin lyase-like 68 407 IPR011050 -
Pte7g00550 492 PANTHER PECTATE LYASE 18-RELATED 25 408 IPR045032 GO:0030570
Pte7g00550 492 Pfam Pectate lyase 150 331 IPR002022 -
Pte7g00550 492 Gene3D - 67 409 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00550 Pte-Chr7 12049867 12054844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00550 17 416 Polysaccharide Lyase AT3G54920 68.293 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00550 K01728 - tcc:18586518 739.954