Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00544 ATGGTTCAGTCGAAGAAGAAAGCGAATAACAGCGATAGTGACGAAGACGACGTCTTCTACTACCGTTATGCTTCAATCTCAGCCACTGCCACCACTTCTTCAAACTCAGCAACCAAAAGCCACAAGGGACCCAGTGGTTCAGGCACCTTGGCACCTTCAAAATCAACCCTTTACGTCTCAAACATTGATTACTCACTCACAAACTCTGATCTACATACCCTGTTCTCCGCTTTCGGCAAAATCGCTCGAGTCACGATCCTCAAGGACCGAGTCACTCGTCAAAGCCGTGGTGTCGCTTTCATCCAATATGTCTCACGTGACGACGCTCACAAAGCCGCGCGTGAAATGAACCGTAAGATACTCAACGGCCGTACACTCACCGCTTCTATAGCATCTGACAATGGCCGGGCTGCTGAGTTCATTAGGAAAAGAGTTTACAAGGATAAGACTCGCTGTTATGAATGTGGGGTTTCTGGGCATTTGTCGTATGAGTGTCCGAAGAATCAGTTGGGGCCTAGAGAACGACCTGTGCAGAAGAGCGGAAGAAGGGGAGGAGTAGGAGGAGGTGTCGGTGGTGGTGGGTGGAGGACGGTTGATGGGGAGGCGGAGGAAGGGGAGGAGGAGGAAGATGGTGCGGAGAGGTTTGAGGATGATAACTGGGCGTCTATTGTTGATGATGGAGCAGATGAGAGGTTGTTAAGAGGGAATGAGCAGGATGTTGTAGAGAAGAAGAAACGTAAGAGAGTTAGTTATTTCAGTGATGAGAGTGATGCTGATGAGGAATGA 786 0.4936 MVQSKKKANNSDSDEDDVFYYRYASISATATTSSNSATKSHKGPSGSGTLAPSKSTLYVSNIDYSLTNSDLHTLFSAFGKIARVTILKDRVTRQSRGVAFIQYVSRDDAHKAAREMNRKILNGRTLTASIASDNGRAAEFIRKRVYKDKTRCYECGVSGHLSYECPKNQLGPRERPVQKSGRRGGVGGGVGGGGWRTVDGEAEEGEEEEDGAERFEDDNWASIVDDGADERLLRGNEQDVVEKKKRKRVSYFSDESDADEE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00544 261 SUPERFAMILY Retrovirus zinc finger-like domains 141 168 IPR036875 GO:0003676|GO:0008270
Pte7g00544 261 SUPERFAMILY RNA-binding domain, RBD 51 137 IPR035979 GO:0003676
Pte7g00544 261 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 259 IPR044598 GO:0000398|GO:0005689
Pte7g00544 261 ProSiteProfiles Zinc finger CCHC-type profile. 151 167 IPR001878 GO:0003676|GO:0008270
Pte7g00544 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Pte7g00544 261 MobiDBLite consensus disorder prediction 167 221 - -
Pte7g00544 261 Pfam Zinc knuckle 152 167 IPR001878 GO:0003676|GO:0008270
Pte7g00544 261 Gene3D - 142 177 - -
Pte7g00544 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Pte7g00544 261 MobiDBLite consensus disorder prediction 201 215 - -
Pte7g00544 261 Gene3D - 2 139 IPR012677 -
Pte7g00544 261 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 3 139 - -
Pte7g00544 261 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Pte7g00544 261 SMART rrm1_1 56 129 IPR000504 GO:0003723
Pte7g00544 261 SMART rrm2_1 56 129 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00544 Pte-Chr7 11492010 11496058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00544 55 131 Eukaryotic Initiation Factors Gene Family AT1G49760 33.766 7.70e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00544 K13154 - qsa:O6P43_008664 334.724