Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00531 ATGGTTAGAACAGAGGATCCAACATCTCTGCTGGTTGGACAATTGGTTGACTGTGTGAAGGAGATCGGTGCTTTACCTGAATGTCAAAACGTTTGTAGGAAGATGTATGGGAACTTGTTTAGAAGGATCAAATTGTTGAGTCCTCTGTTTGAGGAATTGAGGGACAGTGATGAATTATTGAGTGAAGAAGAGCTTCATGCCTTTAAATCACTCAAGATTGCTTTGGATTCGGCCAAGCAGCTTCTCAAGCTGGTCAACCAAGGGAGTAAGCTTTTTCAGGCTTTTCAGTTGGACGAGACATCAGCTAAGTTTCAATATGTGACAGAACAAATTGAAGCAGCATTGACTGAAATTCCATATGATAACCTTGAAATATCTGAAGAAATTAGGGAACAGATTGAACTTGTGCATGCTCAATTTAAAAGAGCTAAGACAAGAGTGGAATCAACTGATTTAGAGCTAGATGCTGATTTACTCATAGCTGTGAGAGATAGAGATCCTGATCCTGCCTTACTCAAAAGACTTTCTGAAAAATTGCATCTCAAGACCATAAACGACCTCAAGAAAGAGTCTGTTGCATTTCATGAATTGGTTATCGCTACTGGTGGTGAACCTGGAGACGTACTTGAACAGATGTCATCCATTCTCAGGAAACTCAAGGACTGTGTCCTCACACATACTCCTGAAGCTGACATCTCTGAGGGTGAAAAAAATTCAGTTAGAAACCTCTCCCCTGTTATCCCAGATGATTTTCGGTGCCCCATCTCGCTTGAACTGATGAAAGATCCTGTAATTGTCTCAACTGGACAGACCTATGAAAGATCTTCAATTCAGAAATGGTTGGATGCAGGGCACAAAACATGCCCTAAGACGCAACAAACACTGTTGCATACAGCTCTAACCCCTAACTACGTGCTGAAGAGTCTGATTGCGTTATGGTGTGAAAGCAATGGTGTTGAGCTGCCGAAAATGCAAGGAAGCTTCAGAAGCAAAAGATCTGGAAGCAGTATATCAGATTGTGATCGAGCTGCTATAGATGGCTTGTTAGAGAAGCTGGCAACTGGTAATCCAGAACAACAAAGGGCAGCTGCCGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCTGATAATAGAATATGTATAGCTGAGGCAGGAGCTATTCCACTCCTTGTAGAACTATTGTCCTCCATCGATCCTCGAACACAGGAGCATGCTGTTACTGCACTTCTCAATTTGTCCATTAATGAGGGTAACAAGGGACTTATTGTGAATGCGGGAGCTATACCAGACATTGTTGATGTGCTGAAAAATGGTAGTATGGAGGCTAGAGAGAATGCAGCTGCAGCTCTCTTTAGTTTATCGGTTGTAGATGAGAACAAAGTTGCAATAGGAGCAGCTGGGGCTATCCCAGCTCTTATAAAATTACTCTGTGAGGGTACTCCAAGAGGTAAGAAAGATGCTGCTACTGCCATTTTCAATCTTTCAATCTATCAAGGAAATAAAGCAAGAGCTGTAAAGGCTGGCATAGTATCCCCGCTAATGAGATTGCTCAAGGATGCTGGTGGCGGGATGGTTGATGAAGCACTGGCTATACTGGCAATCCTAGGAAGTCATCCAGAAGGCAAGGTAGCAATCAGTCAGGCTGATTCTATACCTGTTCTGGTTGAGGTTATAAGAACTGGTTCCCCACGTAACCGGGAGAATGCTGCTGCTGTCTTGTGGTCACTATGCACTGGTGATCTGAACCAATTGAAACTAGCGCGAGAGCTTGGTGCAGAAGCAGCACTGAAGGAGTTAGCAGAGAGTGGCACTGATAGGGCAAAAAGAAAAGCTGGAAACATATTAGATCTTCTTCAGCGAATCGAAGTTTCTCTCTGTCCAGCAATGCCAGCAAAGCCAATGGCTCGATTACCTCGACTTTCATTACCGTTAATCAATAATGTATTGTAG 1950 0.4344 MVRTEDPTSLLVGQLVDCVKEIGALPECQNVCRKMYGNLFRRIKLLSPLFEELRDSDELLSEEELHAFKSLKIALDSAKQLLKLVNQGSKLFQAFQLDETSAKFQYVTEQIEAALTEIPYDNLEISEEIREQIELVHAQFKRAKTRVESTDLELDADLLIAVRDRDPDPALLKRLSEKLHLKTINDLKKESVAFHELVIATGGEPGDVLEQMSSILRKLKDCVLTHTPEADISEGEKNSVRNLSPVIPDDFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKMQGSFRSKRSGSSISDCDRAAIDGLLEKLATGNPEQQRAAAGELRLLAKRNADNRICIAEAGAIPLLVELLSSIDPRTQEHAVTALLNLSINEGNKGLIVNAGAIPDIVDVLKNGSMEARENAAAALFSLSVVDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVSPLMRLLKDAGGGMVDEALAILAILGSHPEGKVAISQADSIPVLVEVIRTGSPRNRENAAAVLWSLCTGDLNQLKLARELGAEAALKELAESGTDRAKRKAGNILDLLQRIEVSLCPAMPAKPMARLPRLSLPLINNVL* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00531 649 Gene3D - 334 520 IPR011989 -
Pte7g00531 649 Gene3D - 521 625 IPR011989 -
Pte7g00531 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Pte7g00531 649 CDD RING-Ubox_PUB 248 300 IPR045210 -
Pte7g00531 649 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Pte7g00531 649 Pfam Armadillo/beta-catenin-like repeat 539 577 IPR000225 GO:0005515
Pte7g00531 649 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Pte7g00531 649 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Pte7g00531 649 SUPERFAMILY ARM repeat 344 616 IPR016024 -
Pte7g00531 649 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Pte7g00531 649 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Pte7g00531 649 Gene3D - 10 120 IPR036537 GO:0007166
Pte7g00531 649 FunFam RING-type E3 ubiquitin transferase 344 461 - -
Pte7g00531 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 320 IPR013083 -
Pte7g00531 649 PANTHER U BOX DOMAIN-CONTAINING 34 619 - -
Pte7g00531 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Pte7g00531 649 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Pte7g00531 649 FunFam RING-type E3 ubiquitin transferase 462 624 - -
Pte7g00531 649 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Pte7g00531 649 SMART arm_5 456 496 IPR000225 GO:0005515
Pte7g00531 649 SMART arm_5 538 578 IPR000225 GO:0005515
Pte7g00531 649 SMART arm_5 497 537 IPR000225 GO:0005515
Pte7g00531 649 SMART arm_5 415 455 IPR000225 GO:0005515
Pte7g00531 649 SMART arm_5 374 414 IPR000225 GO:0005515
Pte7g00531 649 SUPERFAMILY RING/U-box 238 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00531 Pte-Chr7 10656082 10659708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00531 11 630 U-box Gene Family AT3G54850 67.472 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00531 - - qsa:O6P43_008674 959.903