Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00480 ATGTTTTGTTATAAACGCTGCTTCTGTGGTCTTTTTGGTTTAAAGGGTATCATGAATTGTACTCTGTTCCTTTTGACTCTGTTTGCTGCTTATCATGTGACAGAAGCCAAGGTTGTTTTGATGGGAAGCAATGTCACTCTGTCCTTCGATGATATTGAAGCTAATTTTGCTCCTTCTGTTAAAGGATCTGGTGAATGTGGGGTACTGTATTTGGCGGAGCCTCTTGATGCATGTGCGCCGCTGACAAATAAAGCTGAACACCATCCAAATATTAGTCCTCTTTCGTTAATAATCAGAGGAGGATGCGACTTTGGGGACAAAGTTAGAAATGCACAAAAAGCTGGGTTTAAAGCTGCAATTATCTATGACAATGAAGATGATGGCACCTTGGTATCAATGGCTGGTGATCCAAATGGCATTAGAATACCTGCTGTATTTATTACGGAGGTTTCCGGTGAAACACTAAAGAGATATGCAGGATTAACTAATTTGGAGATTTGCTTAATTCCCAGTTTTGAAAACATGGCATGGTCAATCGTGAGAATTTCATTCATTTCCCTACTTGCCATGCTTGCTGCGTTGGCCACATGTTTCTTCATTCGTAGGCATCACATAAGAACAGAAAGGTCTCAAGCTTCTCGTGTTAGAGAATTTCATGTCATGAGTAAGCGGCTAGTGAAAGCAATGCCAAGTTTGATATTCTCTACTGTTTTGGAGGACAATTGTACATCAACAACATGCACCATATGTCTTGAAGACTATAATGAGGGAGAAAAGCTCAGAATTCTTCCATGTCGTCACAAATTTCATGCTTTCTGTGTTGACTCTTGGCTTACTTCATGGAGAGCCTTTTGCCCAGTTTGCAAGCGTGATGCGAGAACTGGTACGTGCGAACCACCTGCTTCAGAATCTACACCTTTACTCACATCAGGTGCTGGATCTTTTGCTTCTTTTATATTATCATCAAGATCATCTTTGGTAGCTTCTCCAGCCATACATATTCTTCCTGCATCATTACGTTCCGTTTCTCGTCCTCATTCTCTTGCTAGCACTCGTTATACTTCCCAATCTCTTGCCTCTTACCAGCAATCCCCACCTCTCAGTATCAGCCAAAGCTCCGTAGACCTAAGAAATGCATCTCAAAGATCTCAAAATTCCAATTTGGTGTCTCCATATCTATCTGCATCGCCTTTCAACTCAAGATACGTATCTGCAAATGTTCGCAGTTCAAGCAACACATCAGTTAGTATCATGGGTTCTTCTAATCTTTGTCAGCACCTTCTGCATTATAGCGAGTCAGCAACAAGCTTTTCTCCTTTTGCTTCTGCCCATTCTCTGCCAGAATGCTAA 1350 0.4141 MFCYKRCFCGLFGLKGIMNCTLFLLTLFAAYHVTEAKVVLMGSNVTLSFDDIEANFAPSVKGSGECGVLYLAEPLDACAPLTNKAEHHPNISPLSLIIRGGCDFGDKVRNAQKAGFKAAIIYDNEDDGTLVSMAGDPNGIRIPAVFITEVSGETLKRYAGLTNLEICLIPSFENMAWSIVRISFISLLAMLAALATCFFIRRHHIRTERSQASRVREFHVMSKRLVKAMPSLIFSTVLEDNCTSTTCTICLEDYNEGEKLRILPCRHKFHAFCVDSWLTSWRAFCPVCKRDARTGTCEPPASESTPLLTSGAGSFASFILSSRSSLVASPAIHILPASLRSVSRPHSLASTRYTSQSLASYQQSPPLSISQSSVDLRNASQRSQNSNLVSPYLSASPFNSRYVSANVRSSSNTSVSIMGSSNLCQHLLHYSESATSFSPFASAHSLPEC* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00480 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 294 IPR013083 -
Pte7g00480 449 Gene3D - 28 165 - -
Pte7g00480 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 207 294 - -
Pte7g00480 449 Pfam Ring finger domain 246 289 IPR001841 -
Pte7g00480 449 Pfam PA domain 99 155 IPR003137 -
Pte7g00480 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 36 169 - -
Pte7g00480 449 SUPERFAMILY PA domain 96 151 IPR046450 -
Pte7g00480 449 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 166 304 - -
Pte7g00480 449 ProSiteProfiles Zinc finger RING-type profile. 247 289 IPR001841 -
Pte7g00480 449 SMART ring_2 247 288 IPR001841 -
Pte7g00480 449 SUPERFAMILY RING/U-box 238 294 - -
Pte7g00480 449 CDD PA_C_RZF_like 33 174 IPR044744 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00480 Pte-Chr7 8769752 8776739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00480 30 448 C3H Transcription Factor Family AT1G22670 46.136 5.03e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00480 K15692 - cave:132189173 566.614