LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte7g00449	ATGGCCAGAGTAACAGGAAGAGCGCTCTACAGTATATCTCACACCTCTAACTTTTCTTCAATAACACGACTTTCTCATGTCAGCCGCTTCCCGCTTCTCAAACTCACAAAGCCCAGTAGGGTTTTTGTGGGGTTTAGACCCCTCTGTTCTCTCACCAGTCCCACAACCACCGGAGCAACTGATGAGATTAAGCACTCGATGCTTCTTGAGAGACTAAGAACCAGACACCTTAAGGACAATACTAAAAACCCACAACCCAAGACTCGTGCTAATGGTTCCAATGAGAGGAGACGTCAAGATGAGTCCAACATGTCTGACGAGAAGCAGAAGAAAAATAAGGTTTTTGATAGTTTTAACGAATTGGGTCTGACTGAAGAGGTCATGGGGGCTGTGAAGGAGATGGGTATTGAGGTTCCTACTGAGATACAGGGTATTGGGATACCAGCTGTGTTGGTAGGAAAGAGTGTGGTTTTGGGTTCTCATACCGGTTCTGGCAAGACTCTAGCTTACATGCTACCCCTTGTTCAATTGCTGAGAAGGGATGAGGCAATGTATGGCATGATCATGAAGCCCAGGCGTCCTCGAGCAGTGGTACTATGTCCAACTAGGGAGTTATCTGAGCAGGTGTTTCGGGTTGCAAAGTCCATAAGTCATCATGCACGATTCAGATCTACAATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAAGACTCATTAAGCAATCCCATAGATATGGTAGTTGGGACACCTGGAAGAATTCTTCAACACATTGAAGAGGGTAACATGGTGTATGGTGATATCAAGTACTTGGTATTGGATGAGGCTGACACAATGTTTGATCGTGGCTTTGGTCCTGATATACGCAAGTTTCTAGCTCCACTCAGGCATCGTGAATCTAAACCTGATGGCCAAGGTTTTCAAACTGTCTTGGTCACTGCTACAATGACAAATGCCGTGCAAAAGCTGATTGATGAAGAATTTCAAGGGATTGTACATTTACGCACTGCATCAATACACAAGAAGGTGGCATCCTGTCGTCATGACTTTATTAGACTCTCAGGTTCTGAGAACAAGCTGGAAGCATTGCTACAGGTTCTTGAACCAAGTTTAGCGAAGGGCAATAAAGTGATGGTTTTCTGTAATACTTTGAATTCTAGCCGAGCAGTGGATCATTTTCTCGCTGAAAATCAGATTGCCACAGTCAATTACCATGGTGAGGTGCCAGCTCAGAAAAGGGTGGAAAACCTTAACAAGTTTAAGAGTGACAACGAAGATTGTCCAACATTGGTTTGTACAGACTTGGCTGCTAGGGGATTGGACCTGGACGTCGATCATGTTATCATGTTTGATTTTCCCTTGAATTCTATTGATTATCTCCATAGGACTGGAAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTGACGAGCATGGTTGCTAAAAGGGACTTGCTACTGGCCACACGAATAGAGGAAGCAATACGTAAGAATGAGAGTTTGGAGTTACTTTCTGTTGATAATATTAAGAGGGACATTGCTAGGGCTCAAATAACTGAGCAGAAGAAAGCGAAAGTGGCCAAGGTTTCAAATCAGAAAAACAAAACCAGTGCGGCATCAGTGAATGTTTCTGGTGGCCGTTCCAAGGTTTTAGCTTCCAAGACATTTGCAAAAGCCAAAGCTGGTGTAATATCTGTTAAATCAGTGAAATCTGCAAAACCCAAACCTGGCATGAAATCTGTTAAATCAGTGAAATCTGCAAAACCCAAACCTGGCATGAAATCTGTTAAATTAGTGAAACCTTCAAGTTCTATTAGTTCAAGAAAAGCTCCCTCGGTAAAGAAGCAACCAAGCAAGTCATCTGGTTTTGGAAAACCACCATCTTCAAAACTTAGCGTTGTTGGGTTCAGAGGGCGAAATTCTTCTAGCAAGAGAGTAACTACGCCAAATTAA	1950	0.4364	MARVTGRALYSISHTSNFSSITRLSHVSRFPLLKLTKPSRVFVGFRPLCSLTSPTTTGATDEIKHSMLLERLRTRHLKDNTKNPQPKTRANGSNERRRQDESNMSDEKQKKNKVFDSFNELGLTEEVMGAVKEMGIEVPTEIQGIGIPAVLVGKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAMYGMIMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLSNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLAPLRHRESKPDGQGFQTVLVTATMTNAVQKLIDEEFQGIVHLRTASIHKKVASCRHDFIRLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLAENQIATVNYHGEVPAQKRVENLNKFKSDNEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSMVAKRDLLLATRIEEAIRKNESLELLSVDNIKRDIARAQITEQKKAKVAKVSNQKNKTSAASVNVSGGRSKVLASKTFAKAKAGVISVKSVKSAKPKPGMKSVKSVKSAKPKPGMKSVKLVKPSSSISSRKAPSVKKQPSKSSGFGKPPSSKLSVVGFRGRNSSSKRVTTPN*	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte7g00449	649	SMART	ultradead3	135	350	IPR014001	-
	Pte7g00449	649	MobiDBLite	consensus disorder prediction	91	111	-	-
	Pte7g00449	649	Pfam	DEAD/DEAH box helicase	140	323	IPR011545	GO:0003676\|GO:0005524
	Pte7g00449	649	CDD	DEADc	127	326	-	-
	Pte7g00449	649	Gene3D	-	70	335	IPR027417	-
	Pte7g00449	649	MobiDBLite	consensus disorder prediction	598	626	-	-
	Pte7g00449	649	Gene3D	-	344	571	IPR027417	-
	Pte7g00449	649	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	62	508	-	-
	Pte7g00449	649	SMART	helicmild6	388	470	IPR001650	-
	Pte7g00449	649	MobiDBLite	consensus disorder prediction	566	649	-	-
	Pte7g00449	649	MobiDBLite	consensus disorder prediction	74	111	-	-
	Pte7g00449	649	MobiDBLite	consensus disorder prediction	633	649	-	-
	Pte7g00449	649	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	147	334	IPR014001	-
	Pte7g00449	649	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	359	509	IPR001650	-
	Pte7g00449	649	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	116	144	IPR014014	GO:0003724
	Pte7g00449	649	CDD	SF2_C_DEAD	347	479	-	-
	Pte7g00449	649	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	193	489	IPR027417	-
	Pte7g00449	649	Pfam	Helicase conserved C-terminal domain	359	470	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte7g00449	Pte-Chr7	7463444	7469687	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte7g00449	117	492	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.947	4.85e-43	158

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte7g00449	-		-	qsa:O6P43_008047	847.04