Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00401 ATGTCATTCCGTAGTATAGTTCGTGATGTGAGGGATGGACTTGGAAGTTTATCCAGAAGGAGCTTTGAAGTTAGGCTTCCTGGGCATCATGGAGGCAAATCACATGGCTCAATTCATGAAATGCATGATCGGTCTCCAGTGACCCAGACCAGTCGATGGGCTAGCCTCCCTCCTGAGCTTCTGCGTGACGTTATCAAAAGATTGGAAGCAAGTGAAAGTGCATGGCCTGCCCGCAAGCATGTTGTTGCTTGTGCTGCTGTGTGCAAGTCATGGAGGGAAATGTGCAAAGAAATTGTCACAAGCCCTGAACTCTCAGGGAAGATTACTTTCCCTGTCTCATTGAAGCAGCCTGGGTTTAAAGATGGAACCATCCAGTGCTTCATCAAGAGGGACAAATCTAATCTAACATATCACCTTTTTCTTTGCCTTAGTCCTGCTTTGCTTGTCGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGCCGAAGAACTACTTGCACCGAGTATGTTATTTCCATGGATGCTGAAAACATATCAAGATCTAGCAGCACATACATTGGAAAGCTTAGGTCAAATTTTCTTGGAACCAAATTCATAATATATGATACACAGCCTTCTCAAACCACTACAAAAACTTATCCTGGCCGAAGCCGTAGGTTCTACTCAAAAAAGGTTTCTCCGAAGGTCCCAACAGGAAGCTACAACATTGCTCAAGTCTCCTATGAGCTGAATGTGCTCGGCACAAGGGGACCTCGTAGAATGCATTGTATCATGCACTCAATTCCGACCTCATCCCTCGAGCCTGGGGGGAGTGTTCCCAGCCAGCCAGAATTCCTTCCCCAGTCTCTTGAGGATTCTTTCCGTAGTATATCCTTCTCGAAATCCGTTGACAGTTCAATGGAGTTTAGCAGCGCTAGATTTTCAGACATCATTGGAATGCAAAATGATGAAGAGGAGGGAAAAGTAAGACCACTAGTTTTGAAGAACAAAGCACCAAGGTGGCACGAACAGCTGCAGTGTTGGTGCCTCAACTTCCGGGGAAGGGTAACTGTTGCCTCAGTCAAAAATTTTCAGTTGATTGCGGCTACACCGGCTCCTGCTACTGTTGCGCCAGCACTGTCACAGCCTAGCCAATCTGATCAGGACAAGATTATTTTGCAATTTGGCAAAGTTGGCAAGGACATGTTTACTATGGATTACAGATATCCATTGTCTGCATTTCAGGCATTTGCTATCTGTTTGACAAGCTTTGATACCAAATTGGCATGTGAATAA 1275 0.4502 MSFRSIVRDVRDGLGSLSRRSFEVRLPGHHGGKSHGSIHEMHDRSPVTQTSRWASLPPELLRDVIKRLEASESAWPARKHVVACAAVCKSWREMCKEIVTSPELSGKITFPVSLKQPGFKDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRSRRTTCTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPSQTTTKTYPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCIMHSIPTSSLEPGGSVPSQPEFLPQSLEDSFRSISFSKSVDSSMEFSSARFSDIIGMQNDEEEGKVRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPAPATVAPALSQPSQSDQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00401 424 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Pte7g00401 424 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Pte7g00401 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pte7g00401 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Pte7g00401 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pte7g00401 424 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Pte7g00401 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Pte7g00401 424 Pfam Tub family 114 419 IPR000007 -
Pte7g00401 424 FunFam Tubby-like F-box protein 48 101 - -
Pte7g00401 424 FunFam Tubby-like F-box protein 110 424 - -
Pte7g00401 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
Pte7g00401 424 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Pte7g00401 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Pte7g00401 424 PANTHER TUBBY-RELATED 47 422 - -
Pte7g00401 424 Gene3D - 48 104 - -
Pte7g00401 424 CDD F-box_AtTLP-like 53 97 - -
Pte7g00401 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
Pte7g00401 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Pte7g00401 424 SUPERFAMILY F-box domain 41 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00401 Pte-Chr7 5413160 5417128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00401 1 425 TUB Transcription Factor Family AT1G76900 69.783 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte7g00401 Tub 2.6e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00401 K19600 - qsu:111992792 731.48