Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00393 ATGGAAAGCTGTAGTGATGATATCAGTAGCAGCAATAACCATGAGAGCACACAACATAATGAACACTGGCAAGCTGAGGAAGCCATTGGTGGAAATACAGAAGCTCTTCAAGCTTTAAGGGAACTCATCATCTTTCCTCTTCTATACTCTTCTGAATCTCAGAAACTTGGTCTTAAGTGGCCAAGAGGATTGCTTTTATATGGTCCTCCGGGCACTGGCAAGACAAGTTTGGTGCAAGCAATTGTTCGCGAGTGTGGTGCATATTTGACTGTTGTCAGTCCTCATTCTGTTCATAGAGCACAAGTTGGTGAAAGTGAGAGGATTCTCCGAGAAACCTTTTCAGAGGCATCATCACTTGCAAACATCGACAAGCCTTCTGTTATCTTCATTGATGAAATAGATGCATTATGCCCTCATCGCAATTCCAGAAGGGAGCAAGATGTGCGCATAGCCTCACAGCTTTTTACACTGATGGATTCTAACAAACCATCTGATTCTGTGCCTGGTGTGGTCGTCGTTGCATCAACCAACAGAGTTGATGCTGTAGATCCTGCCTTACGAAGAGCTGGGCGCTTTGATGTTGAGATTGAAGTCTCCATACCAAATGAAGAGGACCGATTACAAATTCTCAGGCTTTACACAAAGAAGCTTCCTTTAGATTCAAGTGTTGATTTACAATCTATTGCTGCATCTTGCAATGGATATGTTGGAGCCGACTTGGAAGCTCTTTGTCGTGAAGCTACAGTTTGTGCAGTCAAAAGGTCCTCAAAAACAAGTGATGGTAGTACTATGAGCTTAAGAACAGAAGATTGGGAGCAAGCAAGAACCATTGTTGGGCCAAGCATTACAAGGGGCGTCACTGTGGAAGTTCCCAAGGTGACATGGGAAGAAATTGGAGGATTGAAAGAGTTGAAGAAAAAGTTAAAGCAAGCTGTGGAATGGCCTATAAAGCATTCTACGGCATTTACGAGATTAGGAATATCACCTGTACGTGGAATTCTTCTGCATGGTCCTCCAGGATGCTCGAAAACAACCCTTGCCAAAGCTGCCGCTCATGCTGCTCAAGCATCTTTCTTTTCCCTAAGTGGTGCAGAAATGTATTCAATGTATGTTGGGGAGGGAGAGACTTTACTGCGTAACACTTTTCAACGAGCTCGACTAGCAGCACCTAGCATAATTTTCTTTGATGAAGTCGATGTGATTGCTGCTAAAAGGGGTGGGAGTTCTAGTGGCACTGTCACAGTTGGAGAGAGGCTTCTGTCAACTCTATTGACTGAAATGGATGGCTTAGAAGAAGCCAAAGGTATTTTAGTTTTGGCTGCTACAAATCGCCCTCGTGCTATTGATGCTGCACTCATGCGTCCTGGAAGGTTTGATTTGGTTCTCTATGTACCACCACCTGATTTAGAAGCTCGTTATGAGATACTACACGTACATACACGCCGTATGAAAATTGGAAGTGATGTGGATCTCAGAGGGATTGCAGAAAACACTGAACTATTCACAGGGGCTGAACTAGAGGGTCTGTGCAGGGAAGCTGGAATTGTAGCTCTTCGGGAGAACATGTCTGCAAATGTTGTCTGCAATCGTCATTTCCAGATTGTGCAAGAATCTCTGAAGCCAGCTTTGACGAGGGAAGATTTGAATTCATACTCATCTTTCTTGAAGAAACAATCTTCAATGCGTTCTGACCAATCTGAACTTGGTGCAAAACAATGTTCAACTCAACAGAATAAATTGCTGGGTAAATTTTCTTTGTCTAAATTTGCAATTGTCAGTTTTATATTGCTTGCTGCTGGAAAATGTATTACGATAAGCAGAGAACAGAATTCACATGAACTTTCAGCCACTTGA 1854 0.4299 MESCSDDISSSNNHESTQHNEHWQAEEAIGGNTEALQALRELIIFPLLYSSESQKLGLKWPRGLLLYGPPGTGKTSLVQAIVRECGAYLTVVSPHSVHRAQVGESERILRETFSEASSLANIDKPSVIFIDEIDALCPHRNSRREQDVRIASQLFTLMDSNKPSDSVPGVVVVASTNRVDAVDPALRRAGRFDVEIEVSIPNEEDRLQILRLYTKKLPLDSSVDLQSIAASCNGYVGADLEALCREATVCAVKRSSKTSDGSTMSLRTEDWEQARTIVGPSITRGVTVEVPKVTWEEIGGLKELKKKLKQAVEWPIKHSTAFTRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAEMYSMYVGEGETLLRNTFQRARLAAPSIIFFDEVDVIAAKRGGSSSGTVTVGERLLSTLLTEMDGLEEAKGILVLAATNRPRAIDAALMRPGRFDLVLYVPPPDLEARYEILHVHTRRMKIGSDVDLRGIAENTELFTGAELEGLCREAGIVALRENMSANVVCNRHFQIVQESLKPALTREDLNSYSSFLKKQSSMRSDQSELGAKQCSTQQNKLLGKFSLSKFAIVSFILLAAGKCITISREQNSHELSAT* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00393 617 CDD RecA-like_CDC48_NLV2_r1-like 28 198 - -
Pte7g00393 617 SMART AAA_5 60 202 IPR003593 GO:0016887
Pte7g00393 617 SMART AAA_5 329 468 IPR003593 GO:0016887
Pte7g00393 617 FunFam Cell division control protein 48-B-like protein 283 467 - -
Pte7g00393 617 ProSitePatterns AAA-protein family signature. 436 454 IPR003960 GO:0005524|GO:0016887
Pte7g00393 617 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 68 87 - -
Pte7g00393 617 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 414 433 - -
Pte7g00393 617 FunFam Cell division control protein 48 homolog B 21 199 - -
Pte7g00393 617 Gene3D - 468 559 - -
Pte7g00393 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 272 IPR027417 -
Pte7g00393 617 Pfam AAA+ lid domain 222 258 IPR041569 -
Pte7g00393 617 Pfam AAA+ lid domain 488 533 IPR041569 -
Pte7g00393 617 PANTHER AAA-FAMILY ATPASE 9 558 - -
Pte7g00393 617 Pfam ATPase family associated with various cellular activities (AAA) 333 465 IPR003959 GO:0005524|GO:0016887
Pte7g00393 617 Pfam ATPase family associated with various cellular activities (AAA) 64 199 IPR003959 GO:0005524|GO:0016887
Pte7g00393 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 551 IPR027417 -
Pte7g00393 617 MobiDBLite consensus disorder prediction 1 18 - -
Pte7g00393 617 FunFam spermatogenesis-associated protein 5-like protein 1 467 553 - -
Pte7g00393 617 MobiDBLite consensus disorder prediction 1 23 - -
Pte7g00393 617 Gene3D - 201 282 - -
Pte7g00393 617 Gene3D - 9 200 IPR027417 -
Pte7g00393 617 Gene3D - 283 467 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00393 Pte-Chr7 5326667 5334394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00393 263 541 Calmodulin-binding Proteins AT3G56690 47.670 1.00e-83 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00393 - - qsa:O6P43_032902 902.894