Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00360 ATGGCAGATCTTGCTAGCCACGGGAATGCAGACCGGAACATTGAGCAGGCTCTGATTGCTTTAAAGAAGGGTACTCAGTTGCTTAAATATGGTCGGAAGGGGAAGCCTAAGTTTTGTCCTTTTAGAGTCTCTAGTGATGAATCATCTTTGATTTGGATTTCGAGTAGTGACGAAAGACGTTTGAAGTTATCTGCTGTCTCCAGAATTATCCCTGGGCAAAGAACCGCTGTTTTCCAACGATTTCTGCGGCCAGAGAAGGATTATTTATCTTTTTCTCTAATATATAACAACGGGAAGCGTTCTCTAGATCTGATTTGCAAGGATAAAGTTGAAGCAGACGTGTGGATTGCTGGACTTAAAGCATTGATATCATCTAGTCAAGGTGGGCGCTCCAAAGTTGATGGATGGAGTGATGGAGATTTGTACCTTGATGATAGAGAGCTGACTTGCAATAGTCAAAGTTCAACCAATGCGTCACGGAGTGTTAGCTCTCCAGACGTATCTGTGAGTATTAATCCATATACCTCGCCTAAGAAGTTTCAGCCTGAGAATACTGCATATTCTGAACGATCACATGTACCATCAGAGTCTTCAACTATGCAAGTAAAGGGATCTGGTTCAGATGCTTTCCGAGTTAGTGTTTCTAGTGCCCCAAGTACGTCTAGCCATGGTTCAGCACAAGATGATTGTGATGCTCTAGGGGATGTATACATATGGGGTGAAGTTGTTAGTGATGTTGTGAAAATTGGGGTTGATAAAAATGTGAATTATTTTTTTCCAAGAATGGATATGCTTCTTCCCAAGCCTTTGGAGTCAAATTTAGTTTTGGATGTCCATCAAATTGCATGCGGTTTGAGGCATACTGCACTTGTCACAAGGCAAGGCGAAGTTTTTACATGGGGTGAAGAATCTGGAGGACGTTTGGGTCATGGTGTGGGGAAGGATGTGATTCAACCCTGTCTAGTTGAAGCCTTGGCTGCCACAACTGTTAATTTTGTTGCCTGTGGGGAGTTCCACACTTGTGCTATTACTGTATCTGGGGAGCTATATACGTGGGGAGATGGTACTCATAATGCCGGGCTTCTGGGTCATGGCAATGATGTGAGTCATTGGACACCCAAGAGGATTGCTGGTCCCCTTGAAGGACTAAAAGTTGCTTCAGTCACTTGTGGTCCATGGCATACAGCCTTGGTGACTTCAACTGGACAGCTCTTCACGTTTGGTGATGGAACTTTTGGTGTGCTTGGACATGGAGATAGGGAAAGTGTTTTGTATCCAAGAGAAGTTGAATCATTGTTGGGATTGAGGACAATGACTGTCGCTTGTGGTGTTTGGCATACTGCAGCTGTGGTCGAGGTCATTGTAACCCAATCAAGTGCATCATCAGGTAAGTTGTTTACTTGGGGTGATGGGGACAAAAATCGCCTTGGACAGGGAGACAAAGAAGCTCGTCTTAAACCAACATGTGTTCCAGCACTCATTGATTTTGATTTTCATAAACTAGCTTGTGGACATAGTTTGACTGTTGGTCTTACTACATTAGGCCATGTTTTCACGTTCGGTAGCACCGTTTATGGTCAGCTTGGGAATCCACAATCTGATGGGAAGCTGCCCTCTTTGGTAGAAGACAAGCTTGCTGGGGAAACTGTCGAGGAAATTGCTTGTGGTGCATATCATGTTGCAGTTTTGACATCAAAAAATGAAGTTTATACATGGGGTAAGGGTGCTAATGGTAGGTTGGGCCATGGAGACATTGAAGATCGGAAGGCACCAACTTTGGTTGAGGCTTTGAAGGATAGACATGTCAGATATATTTCATGTGGTTCAAACTATACTGCTGCGATTTGCCTTCACAAATGGGTCTCTGGTGCTGAGCAGTCACAATGTTATGCGTGTAGACAGGCTTTTGGTTTCACTAGGAAACGGCACAACTGCTATAATTGTGGACTTGTGCATTGCCATACATGCAGTTCAAAAAAAGCAGCAAGAGCAGCACTTGCTCCTAATCCTATCAAGCCATATCGTGTTTGTGATTCATGTTATGTCAAAATGAACAAGGTTTTGGAAGCTGGTGATAACAATAGAAGGAATGATTTGCCACGTTTGTCAGGTGAAAACAAGGACAGAATAGACAAGCCTCAGGCAAGGTTGTCCAAGTCAATGGTGCCTTCAAATATGGATTTGATAAAGCAGCTAGATAACAAAGCCTTAAAACAAGGAAAGAAAGCTGATGCATTCTCTATGGTCCGTACCTCACAGACACCTTCTTTACTGCAGCTTAGAGATGTTCTTGTCTCTGCTGCTGTTGATTTTCAACAATCAGTACCTAGACCAGTTCTTTCGTCATCTGGTATGAGTTCTAGATCCGTATCCCCTTTCTCTAGGAGATCAAGTCCACCTCGTTCTGCTACTCCTTTCCCGACATCAACAGGACTTTCATTCTCCAAAAGTGTTGCAGAACGTTTGAAGAAAACCAATGAACTTCTAAATCAAGAAGTACATAAATTACGTGCTCAGATTGAAAACATTAGAGAGAGATGTGAAGTGCAAGAAATAGAGCTTCAAAAATCAGCAAAGAAAACTCAAGAAGCTATGGTGCTTGCATCTGAGGAGTCTGCTAAAGCTAAGGCTGCAAAAGAAGTTATAAAGTCTCTGACAGCTCAACTTAAAGATTTGGCTGAGAGGTTGCCTCCTGGAGCTTATAATACTGAAAGCATGAGAGCAGCTTTCCTTCCTAATGGTTTGGAAATAGATGGTATTCACTTTCCTGATGCCAACAGTGATAACCATTCTAGAACCAATTCAGGCAGCAATGCAAGTTTAGCGTCATTGGGAAATGATTCTTCTTACATGAATGGAATTGAGGGTCAATTGCTTCCACAAGGGAGCAATGTGACTCCAATTGTGCGGATGGTGAATGGTGGGGGTATGGTTCAAGCAAGTAGCAGTAGTGTGTCAGATACAATTGAGGGCAGGAATTCTAGCACTTCCCAGGATGGAGAAAATGCTACAGGACCTAGGAGCGCAGCAATGACTTCCAGCATTAGTAATGTTGACGCAGAGTGGATTGAACAGTATGAACCTGGTGTGTACATAACACTAGTTGCCTTAGGAGATGGGACCAGAGATCTTAAACGGGTGCGCTTCAGCCGGAGAAGATTTGGAGAAGACCAAGCAGGGGTTTGGTGGTCAGAGAACCGTGAGAAGGTGTATGATAGGTACAATGTTCGTGGGACTGATAAGTCACTGGCAAGCCATGGTGCTCGTAGATCAGAGGGAGCTGTCTCACCGGTTTCCAAACCTTTGTAA 3309 0.4358 MADLASHGNADRNIEQALIALKKGTQLLKYGRKGKPKFCPFRVSSDESSLIWISSSDERRLKLSAVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEADVWIAGLKALISSSQGGRSKVDGWSDGDLYLDDRELTCNSQSSTNASRSVSSPDVSVSINPYTSPKKFQPENTAYSERSHVPSESSTMQVKGSGSDAFRVSVSSAPSTSSHGSAQDDCDALGDVYIWGEVVSDVVKIGVDKNVNYFFPRMDMLLPKPLESNLVLDVHQIACGLRHTALVTRQGEVFTWGEESGGRLGHGVGKDVIQPCLVEALAATTVNFVACGEFHTCAITVSGELYTWGDGTHNAGLLGHGNDVSHWTPKRIAGPLEGLKVASVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRESVLYPREVESLLGLRTMTVACGVWHTAAVVEVIVTQSSASSGKLFTWGDGDKNRLGQGDKEARLKPTCVPALIDFDFHKLACGHSLTVGLTTLGHVFTFGSTVYGQLGNPQSDGKLPSLVEDKLAGETVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVRYISCGSNYTAAICLHKWVSGAEQSQCYACRQAFGFTRKRHNCYNCGLVHCHTCSSKKAARAALAPNPIKPYRVCDSCYVKMNKVLEAGDNNRRNDLPRLSGENKDRIDKPQARLSKSMVPSNMDLIKQLDNKALKQGKKADAFSMVRTSQTPSLLQLRDVLVSAAVDFQQSVPRPVLSSSGMSSRSVSPFSRRSSPPRSATPFPTSTGLSFSKSVAERLKKTNELLNQEVHKLRAQIENIRERCEVQEIELQKSAKKTQEAMVLASEESAKAKAAKEVIKSLTAQLKDLAERLPPGAYNTESMRAAFLPNGLEIDGIHFPDANSDNHSRTNSGSNASLASLGNDSSYMNGIEGQLLPQGSNVTPIVRMVNGGGMVQASSSSVSDTIEGRNSSTSQDGENATGPRSAAMTSSISNVDAEWIEQYEPGVYITLVALGDGTRDLKRVRFSRRRFGEDQAGVWWSENREKVYDRYNVRGTDKSLASHGARRSEGAVSPVSKPL* 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00360 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 346 397 IPR000408 -
Pte7g00360 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 462 509 IPR000408 -
Pte7g00360 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 515 563 IPR000408 -
Pte7g00360 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 568 615 IPR000408 -
Pte7g00360 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Pte7g00360 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Pte7g00360 1102 Pfam Transcription factor regulating root and shoot growth via Pin3 1020 1074 IPR013591 -
Pte7g00360 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 691 IPR013083 -
Pte7g00360 1102 MobiDBLite consensus disorder prediction 922 941 - -
Pte7g00360 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Pte7g00360 1102 Coils Coil 819 860 - -
Pte7g00360 1102 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 623 685 IPR017455 -
Pte7g00360 1102 SUPERFAMILY PH domain-like 14 123 - -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 515 566 IPR000408 -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 463 514 IPR000408 -
Pte7g00360 1102 Gene3D - 13 131 IPR011993 -
Pte7g00360 1102 Pfam Transcription factor BRX N-terminal domain 870 904 IPR027988 -
Pte7g00360 1102 MobiDBLite consensus disorder prediction 777 812 - -
Pte7g00360 1102 MobiDBLite consensus disorder prediction 1081 1102 - -
Pte7g00360 1102 Gene3D - 455 632 IPR009091 -
Pte7g00360 1102 Pfam FYVE zinc finger 619 685 IPR000306 GO:0046872
Pte7g00360 1102 MobiDBLite consensus disorder prediction 926 941 - -
Pte7g00360 1102 SUPERFAMILY RCC1/BLIP-II 233 620 IPR009091 -
Pte7g00360 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Pte7g00360 1102 SUPERFAMILY FYVE/PHD zinc finger 619 690 IPR011011 -
Pte7g00360 1102 MobiDBLite consensus disorder prediction 152 204 - -
Pte7g00360 1102 FunFam PH, RCC1 and FYVE domains-containing protein 1 205 453 - -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 567 618 IPR000408 -
Pte7g00360 1102 MobiDBLite consensus disorder prediction 692 715 - -
Pte7g00360 1102 Coils Coil 868 895 - -
Pte7g00360 1102 CDD FYVE_like_SF 628 681 - -
Pte7g00360 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 281 291 IPR000408 -
Pte7g00360 1102 CDD PH_PLC_plant-like 12 124 - -
Pte7g00360 1102 ProSiteProfiles BRX domain profile. 1020 1075 IPR013591 -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 234 294 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 562 583 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 504 522 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 278 291 IPR000408 -
Pte7g00360 1102 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Pte7g00360 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Pte7g00360 1102 SMART fyve_4 617 686 IPR000306 GO:0046872
Pte7g00360 1102 MobiDBLite consensus disorder prediction 979 1012 - -
Pte7g00360 1102 Pfam Pleckstrin homology domain 56 123 IPR001849 -
Pte7g00360 1102 FunFam PH, RCC1 and FYVE domains-containing protein 1 454 624 - -
Pte7g00360 1102 Gene3D - 175 454 IPR009091 -
Pte7g00360 1102 MobiDBLite consensus disorder prediction 692 723 - -
Pte7g00360 1102 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00360 Pte-Chr7 4915171 4923303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00360 879 1089 Major Intrinsic Protein MIP AT1G31880 30.556 5.52e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00360 - - qsa:O6P43_008117 1675.6