Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00356 ATGGGAAGTGTTGCAGAGGTTGAAGTGGACAAAGTAAACGGTGTCGAAAAAACTGTATATGTCGCCGTTGGTGAAAATGTAGACGAAGGGAAGATTTTACTTCTATGGGCAATTCAGAATTTCTCTGAGAGGAAAATATGCGTGCTTCATGTTCACCAGCCTCAGCACTTGACTTCATCAATCAGCGCACCCCAGGATGAGCAACAAACAAAGAACGGGCTTCTGGAAGAATACCTTTCCATTCTAGCTGAATCCAAGGTACAAGCAAATAAAATTTTGATGGAGATGGATAGTGTTGAAAAAGGGATAGTGGAAATTATTGCTCAATGTGATATTAGATGGCTAATTATGGGAGCTGCCACAGTAGAATATAATTCATGCAAACTAGAAGACCTAAAGTCGAGGAAAGCTAACTTTGTTTGTCAGCAAGCTCCATCATCCTGTAATATTTGGTTTGTTAATGAGGGCAGGCTCATATCTGTCAGGAGAGGAGGAAACAAGAGACTTGATGCAGAGGCTCATACCCCTTTACTTTTGCTGAATTCTGATTCTGGAAATGATCACTCAGTGACACCTAGATCAGATTTTTTTCACGATGAGATGAAACTTCTAGGTACAAGTTATCAGAGCGATGTAGATGCAGGAGAAGATGAAAGCAAGATTTATGGGATGCCAAGAAGGTTCAGATCATGGTTTTCGATGGATCCGAGGTTGTTATTTCGCAAGGTTGTTGGTCTACATAAGGATAGAGTTGATGAAAGTGAAGATATCTATGATAATAGATTACAGCAGGCCATCGAAGATGTTAAGAAAATAAGACAGATAGAGTTCAAAGAGGTAGCCAATAGGTGGAAACTAGAGGATGATATTGTGGAGGCTAAATGCAAGGCTAAAGCTCTAGAAGACTTAACTTCTAAGGAGATCATCAAAAGGAAAGAACTTGAGGAAATATTTGCCGCTGAAAAGCAAGAAGTAGATAAAACAAACAACGAGAAAGATGGATACATGAGGGAGCTTGAGATTGTCCGTACCCAAAATTCTGAACTTGAACGCAATATTTCTGAATCTCAAACCACGGTAGCAGAGTTGGAGGAGAAGATAATCTCAGCTGTTGAACTGTTGATCAGCTTCAGAGATAAACGGGATAAGCTGAAGATAGAACATGACAATGCTGTTAGGCGGGTCAAAGATTTGAAGAAATTGGTAAAAGAGGATGTGAAAAGCTGTTACCGGGCTGAATTTCCTACTTTTTCTTTCATGGAGATCAATAATGCTACTAATGATTTTGATCCATCCTGGAAGATTGCTGAAGGTGGTAAGTATGGAAGTGTTTATAAAGGGATCATTCGGTACATGCATGTTGCCATAAGGATGTTGCCTTCATATGGGTCTCAGAACCAAATGGGTTTCCTACGCAAGGTTGAGTGCTTGAGTAGAGTAAGGCACCCAAACATCTTAACACTAATTGGATTTTGTCCAGAATCTAGATCCCTTGTCTATGAGTACCTCAGAAATGGCAGCCTTGAGGACCACCTTGCTAGCAAAGACACAACTCCTCCACTTCCATGGCAAATTCGAATACGCATTGCAGCTGACATCTGCGCTGCCTTAATTTTTCTTCATGCCAATGACCCTTGTATTGTTCATGGGAACGTAAAACCCAGCAAAGTTCTCCTTGATGCGAACTTTGTTGGAAAAATTGGTGATTTGGGTATCAATTATCTTGTCGGACAAACTGAGGATTCAGCCAACTTCTCCACAAGATACACTAACCTAGATGAAACTACTGCTTACATGGATCCAGAATATGTGGCTACTGGAATGCTGAGTCCAGAATCAGATGTTTATTCTTTTGGAATGTTATTGTTGCGGATTTTAACCGGGAGACCAGTAACTGGAGTAGTGAAGGATGTAACGTGTGCTCTGGAAAAGGGAAACCTTAAAGCAGTTTTGGATTCTTCAGCTGGTGAATGGCCCCTTGATCAAGCTAAACAGCTTGCTCATTTGGCATTGAAGTGCTGTGAGAAGACCTGGTTCAACCGGCCAGATCTTGTTTCTGAAATGTGGGATGTTCTTGAGCCATTAAGAGCTTCATGCATGGGTTCAACACCCTTTACAGGTTCCAAGAAGCTTTCCAGAGTTCCTTCACATTTTGTCTGTCCCATTTTTCAGGAAATCATGAAAGATCCTCAAATAGCTGCAGATGGTTTTACATACGAAGCAGATGCCATTAGAGGGTGGTTATATAGTGGTCACGACACTTCTCCAATGACCAATCTTAAGCTTGAAAACACTGATTTACTCCCCAATTATGCACTACACGATGCAATCCAAGAGTGGCAGCAACTGACTTGA 2355 0.4115 MGSVAEVEVDKVNGVEKTVYVAVGENVDEGKILLLWAIQNFSERKICVLHVHQPQHLTSSISAPQDEQQTKNGLLEEYLSILAESKVQANKILMEMDSVEKGIVEIIAQCDIRWLIMGAATVEYNSCKLEDLKSRKANFVCQQAPSSCNIWFVNEGRLISVRRGGNKRLDAEAHTPLLLLNSDSGNDHSVTPRSDFFHDEMKLLGTSYQSDVDAGEDESKIYGMPRRFRSWFSMDPRLLFRKVVGLHKDRVDESEDIYDNRLQQAIEDVKKIRQIEFKEVANRWKLEDDIVEAKCKAKALEDLTSKEIIKRKELEEIFAAEKQEVDKTNNEKDGYMRELEIVRTQNSELERNISESQTTVAELEEKIISAVELLISFRDKRDKLKIEHDNAVRRVKDLKKLVKEDVKSCYRAEFPTFSFMEINNATNDFDPSWKIAEGGKYGSVYKGIIRYMHVAIRMLPSYGSQNQMGFLRKVECLSRVRHPNILTLIGFCPESRSLVYEYLRNGSLEDHLASKDTTPPLPWQIRIRIAADICAALIFLHANDPCIVHGNVKPSKVLLDANFVGKIGDLGINYLVGQTEDSANFSTRYTNLDETTAYMDPEYVATGMLSPESDVYSFGMLLLRILTGRPVTGVVKDVTCALEKGNLKAVLDSSAGEWPLDQAKQLAHLALKCCEKTWFNRPDLVSEMWDVLEPLRASCMGSTPFTGSKKLSRVPSHFVCPIFQEIMKDPQIAADGFTYEADAIRGWLYSGHDTSPMTNLKLENTDLLPNYALHDAIQEWQQLT* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00356 784 CDD RING-Ubox_WDSUB1-like 715 770 - -
Pte7g00356 784 Coils Coil 311 366 - -
Pte7g00356 784 SUPERFAMILY Protein kinase-like (PK-like) 409 687 IPR011009 -
Pte7g00356 784 Coils Coil 283 303 - -
Pte7g00356 784 Gene3D Phosphorylase Kinase; domain 1 399 502 - -
Pte7g00356 784 SMART Ubox_2 717 780 IPR003613 GO:0004842|GO:0016567
Pte7g00356 784 Gene3D Transferase(Phosphotransferase) domain 1 503 700 - -
Pte7g00356 784 ProSiteProfiles Protein kinase domain profile. 430 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte7g00356 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 784 IPR013083 -
Pte7g00356 784 PANTHER OS02G0152300 PROTEIN 18 779 - -
Pte7g00356 784 Pfam Protein tyrosine and serine/threonine kinase 439 684 IPR001245 GO:0004672|GO:0006468
Pte7g00356 784 Coils Coil 381 401 - -
Pte7g00356 784 Pfam U-box domain 714 781 IPR003613 GO:0004842|GO:0016567
Pte7g00356 784 ProSiteProfiles U-box domain profile. 713 784 IPR003613 GO:0004842|GO:0016567
Pte7g00356 784 SUPERFAMILY RING/U-box 712 781 - -
Pte7g00356 784 CDD STK_N 18 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00356 Pte-Chr7 4872948 4879190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00356 74 781 U-box Gene Family AT3G49060 44.505 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pte7g00356 PK_Tyr_Ser-Thr 6.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00356 - - qsa:O6P43_008190 883.248