Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00296 ATGCAAGGGTTTGCTTTTATCTACATGGAAGATGAGAGGGATGCTGAAGATGCAATTCGTGGTCTCAATAGGACAGAATTTGGTAGGAAGGGGCGCAGACTTCGTGTTGAATGGACTAAGCATGAACGTGGTGTTGGGAAGCCTCGTGGATCCAGAAGATCTTCAGCTAAAATGAGGCCATCAAAGACATTATTTGTTATTAACTTTGATCCTTACAGTACTAGGATAAGGGATTTGGAGAGGCACTTTGAACCTTATGGGAAGATTGTTAGTGTAAGGATTAGAAGGAATTTTGCGTTTGTTCAATATGAATCAGAGGACGATGCCATCAGGGTATTTGATGCTACAAACATGAGCAAATTGCTCGATCGATTGATTTCTGTTGATTTTGCTGAAAGGGATGATGATGAAAAGCGAAATGAGTACGGCCCTGACAGAGGCCTCCATACAGAAGGGAAAGGGGAAGCCCAGATTATGGCCGTGACCGAAGCCCAATTCCGCACAAGGAGGAGAGGGGCAGCCCTGATTATGGCCGTGATCATAGCAGAAGCCCCCATTATAGGGGGAGAGGTGAGAGGGGGAGCCCATATTATGGCCGTCGCAGCAGTACTCCTCACCGCCCTGAGAAGTCTGGTTCTGACTGAAGTCCTTACCAAAGGGATGTGTCCTTATGATGGAGAGAAATCTAGTCCTGAAAACGGTGAAGTCGTCATGGATGATAGCCCTTACGCTAGGGTTAACGCTAGTCCAAGCAATGGTGGCAGAGGGAGCCCTAATTCCTTGACTGAACATAGGGACAATCCCAACTATGGTGACCCAGAAAGCCCTATATATGAAAAATATAGCAGATTCAGTGGCCTGAATCCGGAGTGTCTTGCATTTCACAGGCTAGTTGGGTTGAAGAGAGTGAAATTTGCTTATTAA 924 0.461 MQGFAFIYMEDERDAEDAIRGLNRTEFGRKGRRLRVEWTKHERGVGKPRGSRRSSAKMRPSKTLFVINFDPYSTRIRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDAIRVFDATNMSKLLDRLISVDFAERDDDEKRNEYGPDRGLHTEGKGEAQIMAVTEAQFRTRRRGAALIMAVIIAEAPIIGGEVRGGAHIMAVAAVLLTALRSLVLTEVLTKGMCPYDGEKSSPENGEVVMDDSPYARVNASPSNGGRGSPNSLTEHRDNPNYGDPESPIYEKYSRFSGLNPECLAFHRLVGLKRVKFAY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00296 307 SMART rrm1_1 63 129 IPR000504 GO:0003723
Pte7g00296 307 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 63 169 - -
Pte7g00296 307 Gene3D - 1 56 IPR012677 -
Pte7g00296 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 41 IPR000504 GO:0003723
Pte7g00296 307 Gene3D - 57 144 IPR012677 -
Pte7g00296 307 MobiDBLite consensus disorder prediction 243 275 - -
Pte7g00296 307 MobiDBLite consensus disorder prediction 245 266 - -
Pte7g00296 307 SUPERFAMILY RNA-binding domain, RBD 2 136 IPR035979 GO:0003676
Pte7g00296 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 133 IPR000504 GO:0003723
Pte7g00296 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 126 IPR000504 GO:0003723
Pte7g00296 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 29 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00296 Pte-Chr7 4013500 4015921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00296 2 138 Eukaryotic Initiation Factors Gene Family AT1G49760 27.211 5.01e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00296 K12893 - qsa:O6P43_008263 244.973