Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00227 ATGTCTGAGCTGTACGAGCTTTCCAACGCCGTGCTATTGTCAATGACAGACTACGAAATGGAAGAGGCCTTTGATCTGGAAATGGCTGTTACTTCGTCTGTAGAAGAATCATTTCAAAAGGACAATGACGCATCAAAGTCCTATGTATCAAATCTTCCTGCAGTCGTTTCAACAAGGGTTGATCCAAATGATACTTGCTCAGTTTGTATGGACATCTTCAACCTGAAGATCAGTAGCCCTGTGAGTAATAATGGAGAAGAACAGTGTGTCAAACAAGTTCCATGTGGGCATATCTACCATGCCGACTGCATCGCCACATGGTTGTCTCGCCGTAACACTTGCCCTCTCTGTCGGTGTGAAATTAATCTGACAAACTGA 378 0.4392 MSELYELSNAVLLSMTDYEMEEAFDLEMAVTSSVEESFQKDNDASKSYVSNLPAVVSTRVDPNDTCSVCMDIFNLKISSPVSNNGEEQCVKQVPCGHIYHADCIATWLSRRNTCPLCRCEINLTN* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00227 125 SUPERFAMILY RING/U-box 56 123 - -
Pte7g00227 125 SMART ring_2 66 117 IPR001841 -
Pte7g00227 125 ProSiteProfiles Zinc finger RING-type profile. 66 118 IPR001841 -
Pte7g00227 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 36 121 - -
Pte7g00227 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 123 IPR013083 -
Pte7g00227 125 Pfam RING-H2 zinc finger domain 64 118 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00227 Pte-Chr7 2960234 2961155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00227 15 121 C3H Transcription Factor Family AT5G01980 35.780 1.75e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00227 - K22378 qsa:O6P43_003971 93.9745