Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00200 ATGTCTTCTGCCGGAGGAAACTTTGACGGTGGCGGCGAGGGTGGAGTCAGGACTACCACCGCGTCAGCCAGACCTCTAATGTACTTCTGTTACGAGTGTAACCGCACCGTATCGATAACACCGTTGCCTACCACATCAGAACTCACTTGCCCTAATTGCAACGGTGGTTTCATCGAAGAAATTGAAAACCCTGTTCCTACTCCTAACCCAATATCCAACCCTTTCTTCTCTTTCACAACTGATTTCCCTGGCCACGGCCCTCCGCCTTTCATTTTCTCCACCTCCTCAACTACAACCCCTGGTGCCCAAGGAGGGTTTGATGATCTCTCTGCTCTTTTCGGTGGTCTCGGCCCAAATACATCGTCCCCATTTCAAGAACAAGATGTATTTAATCCATTTATTTTCCTTCAGAACTATCTGCAAACCCTAAGAGCTGGTGGTGCCAATGTTCAATTCGTGATCGAGAATTCTGGCGACCCAGGTGGTGGTACTCGGATACCAGCGGGCCTTAATTTAGGGGATTACTTCTTTGGTCAGGGACTCGAGCAATTGATTCAGCAACTAGCAGAGAATGATCCCAATCGATATGGTACGCCTCCGGCTTCAAAGTCAGCTCTCGAAGAATTACCTAAGATACAGATTTCCGAGGAAATGTTGGCATCGGATGCTTCCCAGTGTGCTGTCTGCAAAGATACTTTTGAACTTGGAGAAGAAGCAAAGCAAATGCCTTGTAAGCATATATACCATTCGGATTGTATCATACCCTGGTTAGAATTGCATAATTCATGTCCTGTTTGTCGGTATGAGTTGCCAACCGACGACCCGGATTATGAACAGAGGCGAGGGAATCCTGTTGATCCGAATAGAAATCAATCTACTCCAACTGGTGGGTTTAATGATTCATTTATAGGTGGAAATGGTGGAAATGATGGGACCGTTGCAGGTTCAGATGATAATGTGCTGACGCCTAGGACGGTTGAGAGGACGTTTAGGGTTCAATTACCTTGGCCTTTCAGGGCATTTGGTTCACCTGCAGGGACAAGCGATAGTGGAAATGCCAATAACGTCGGAAATGATAATGGTGGCGAACAAAACACAGAGAATAGAGCGAATCAGAACTTCCAGTCAGAGCCTAGACAAGAGGATCTGGATTAG 1155 0.4675 MSSAGGNFDGGGEGGVRTTTASARPLMYFCYECNRTVSITPLPTTSELTCPNCNGGFIEEIENPVPTPNPISNPFFSFTTDFPGHGPPPFIFSTSSTTTPGAQGGFDDLSALFGGLGPNTSSPFQEQDVFNPFIFLQNYLQTLRAGGANVQFVIENSGDPGGGTRIPAGLNLGDYFFGQGLEQLIQQLAENDPNRYGTPPASKSALEELPKIQISEEMLASDASQCAVCKDTFELGEEAKQMPCKHIYHSDCIIPWLELHNSCPVCRYELPTDDPDYEQRRGNPVDPNRNQSTPTGGFNDSFIGGNGGNDGTVAGSDDNVLTPRTVERTFRVQLPWPFRAFGSPAGTSDSGNANNVGNDNGGEQNTENRANQNFQSEPRQEDLD* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00200 384 CDD RING-H2_RNF126-like 225 267 - -
Pte7g00200 384 SUPERFAMILY RING/U-box 206 274 - -
Pte7g00200 384 MobiDBLite consensus disorder prediction 284 319 - -
Pte7g00200 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 271 - -
Pte7g00200 384 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Pte7g00200 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 273 IPR013083 -
Pte7g00200 384 MobiDBLite consensus disorder prediction 345 378 - -
Pte7g00200 384 SMART ring_2 226 266 IPR001841 -
Pte7g00200 384 MobiDBLite consensus disorder prediction 341 384 - -
Pte7g00200 384 MobiDBLite consensus disorder prediction 277 319 - -
Pte7g00200 384 FunFam E3 ubiquitin-protein ligase RING1-like 187 273 - -
Pte7g00200 384 Pfam zinc-ribbon 27 61 IPR039525 GO:0061630
Pte7g00200 384 Pfam Ring finger domain 225 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00200 Pte-Chr7 2566075 2569787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00200 167 285 C3H Transcription Factor Family AT5G01980 49.580 4.34e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00200 K11982 - qsa:O6P43_005293 472.241