Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00185 ATGAGGTCACCCATGTTAGGCAATGTCTCTCCCTCGTCAGTTCCATCTTCTGAGCCATTTTCCTCCGTAGAAAATGGTTCTAACGCTAACAAAAGAAAGCGAAGGCCTGCAGGAACTCCAGATCCAGATGCTGAGGTGGTGTCTCTTTCACCTAAGACTCTATTGGAATCGGATCGATATGTGTGTGAGATATGTAACCAAGGATTTCAAAGGGACCAAAACCTTCAGATGCATAGGCGGCGACACAAGGTGCCATGGAAGTTACTCAAGAGGGAAACACCAGTGGTGAGGAAGCGTGTGTTTGTGTGTCCAGAGCCAACGTGCTTGCACCACGATCCATGCCATGCTCTTGGTGACCTTGTTGGGATCAAGAAACATTTCAGAAGGAAACATAGCAATCATAAGCAATGGGTTTGTGAGAAATGTTCCAAAGGGTATGCTGTTCAGTCAGATTACAAAGCTCATCTTAAAACTTGTGGCACCAGGGGACATTCTTGCGATTGTGGCCGAGTCTTCTCAAGGGTAGAGAGTTTCATTGAGCACCAAGATGCTTGTAGCATGGGGCGTCTCCTGTCAGATCAATCACAGCCACTGCAGCCAGCTGCATGTTTATCAAGAACAGCTTCAAGTCAAAGCCCTTCCAGTGAGACCAATTTCAGCACAGCTTTTTGGCCTGCCGCTACTTTAACAATGCCGAAGGTGAAGCCAACTGAAACCTCATTCTTGACCTCCAAGCCAGCTATTGCTGCTGCCACAGTTCCTATGGCTGAAAATTCGGTCAAGAACAACATCAAAACCTGCCATAACTTGGAGCTTAAGCTTTCCACCACCACATCCAATCCCATTGCTATTACATCATCACGCATACAAGAGGACAACCACACTACCCAGTTGCAGCTTTCAATTGGATCATCCGAGTGTGTGGAGAAAAATGAATCGAACACTCCTCCAGTCAGCAATAAGAACTCGCCCAAAGGAAGCAGCTGTAACAACGATGTTGTTAATAACGACAAATCAAGCAATATTGTTGCATTGAGGATACATGAGCAAGCACATGAGCAGCTGAGGCTAGCCATGGCAGAAAAGGCCTACGCTGAAGAAGCAAGACAAGCAGCTAAAAGGCAAATTGAAATAGCTGAGCATGAGTTTTTCAAACGCAAAGAGGATAAGGCAACAAGCACAGGTGGAACTAGATAA 1197 0.4603 MRSPMLGNVSPSSVPSSEPFSSVENGSNANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLLSDQSQPLQPAACLSRTASSQSPSSETNFSTAFWPAATLTMPKVKPTETSFLTSKPAIAAATVPMAENSVKNNIKTCHNLELKLSTTTSNPIAITSSRIQEDNHTTQLQLSIGSSECVEKNESNTPPVSNKNSPKGSSCNNDVVNNDKSSNIVALRIHEQAHEQLRLAMAEKAYAEEARQAAKRQIEIAEHEFFKRKEDKATSTGGTR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00185 398 MobiDBLite consensus disorder prediction 1 47 - -
Pte7g00185 398 Gene3D Classic Zinc Finger 38 100 - -
Pte7g00185 398 Gene3D Classic Zinc Finger 122 198 - -
Pte7g00185 398 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Pte7g00185 398 MobiDBLite consensus disorder prediction 1 27 - -
Pte7g00185 398 Coils Coil 362 382 - -
Pte7g00185 398 MobiDBLite consensus disorder prediction 308 334 - -
Pte7g00185 398 SMART c2h2final6 137 164 IPR013087 -
Pte7g00185 398 SMART c2h2final6 60 82 IPR013087 -
Pte7g00185 398 SMART c2h2final6 101 131 IPR013087 -
Pte7g00185 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Pte7g00185 398 FunFam protein indeterminate-domain 12-like 39 107 - -
Pte7g00185 398 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 370 IPR031140 -
Pte7g00185 398 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Pte7g00185 398 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00185 Pte-Chr7 2358858 2362120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00185 24 383 C2H2 Transcription Factor Family AT2G01940 53.887 2.82e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte7g00185 zf-C2H2 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00185 K25871 - qsu:112038406 535.413