Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00135 ATGCCGGTTGTTACAGACCCCTCTGCAATAGCAGAGCATGTGAAATGGAGAAGGCCCAGGAACCAATTCAGCCAACCCAGTTCAGAAACAGATTCAAACGCGAAATTTCCATCAGTAATTCAATCCACACGCAACAAATCCACTATCTCTACACTCCTTCAGTCTAGCTTATCTAATACTGGCACCAATGAGGCAATACAGAGTAGCATCAATAGCTGTAGAAAGAAGAAGAACAATTTCACAGCTGCAACTTTTAGAGGATTTGGATGCACAGCTGGTGCGTCCCGACAGGTTTCAGTGCCAGCAGTGATTCGCACATCAGCTGACTGGCAAGGAAAGAAGACAACGAAGAAGAACAAAAAGAATGCTTCAAAGAACAATAACAGTGGCAAGACACTTCCAGGTGGGGTTGATGGTTCTAGTTACAATTGTGTAGATTTTCAAGATGTGTGGTGCGGCCCTGGAATTGGGTTTTACAGGGATGCTGCTGCCTCTGTTGATTGCGTTGTGGCTAGGAGGCACGTGCCTTCAAGAGGCAAGATTGATGCGGAGAAAATCAGCCATAGGGAGCACCCTTCTTTTCTAGGAAGGCGTACCATGAATTCAGTAAATGTCCCATTGCTGGATTCTGACCCTGAAATGTTACCCGAATGTCCTGTCTCAGAGGCTTTTGCAGCGTCTAGGTACTACCGCCACGGTAGACGTGCTTCATCTGAAGGTTTTGCAGAGATGATGATGCTCCACGGAAGTTTGCTGATGGGTGGGATGTTTGATTCACACGATCGATTTAGGGACTGGAGACTTGATGTTGACAACATGTCATATGAGGAGTTGCTCGAGTTAGGTGAAAGAATTGGTCATGTGAACACTGGGCTGAAAGAAAATGAAGTAAGCCGCCATATTCGGAGAAGTAAGCTTCTAGTTTTGAATAATATCTCAACGCATCAAGTTGATAGAAAATGTAGCATATGCCAGGAGGAGTATGAAGCGGAAGATGAGCTGGGGAAGCTTCACTGTGGACACAGCTATCATATGGAGTGTATAAGGCAATGGCTTGGACAGAAGAATTTCTGCCCTGTCTGTAAGGCTGAAGTTGTGGCTCGACGCTAA 1110 0.4568 MPVVTDPSAIAEHVKWRRPRNQFSQPSSETDSNAKFPSVIQSTRNKSTISTLLQSSLSNTGTNEAIQSSINSCRKKKNNFTAATFRGFGCTAGASRQVSVPAVIRTSADWQGKKTTKKNKKNASKNNNSGKTLPGGVDGSSYNCVDFQDVWCGPGIGFYRDAAASVDCVVARRHVPSRGKIDAEKISHREHPSFLGRRTMNSVNVPLLDSDPEMLPECPVSEAFAASRYYRHGRRASSEGFAEMMMLHGSLLMGGMFDSHDRFRDWRLDVDNMSYEELLELGERIGHVNTGLKENEVSRHIRRSKLLVLNNISTHQVDRKCSICQEEYEAEDELGKLHCGHSYHMECIRQWLGQKNFCPVCKAEVVARR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00135 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 368 IPR013083 -
Pte7g00135 369 MobiDBLite consensus disorder prediction 109 135 - -
Pte7g00135 369 FunFam E3 ubiquitin-protein ligase rnf12-A 288 367 - -
Pte7g00135 369 Pfam Ring finger domain 320 362 IPR001841 -
Pte7g00135 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 23 365 IPR045191 GO:0061630
Pte7g00135 369 SMART ring_2 321 361 IPR001841 -
Pte7g00135 369 SUPERFAMILY RING/U-box 320 366 - -
Pte7g00135 369 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00135 Pte-Chr7 1691557 1695797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00135 1 276 C3H Transcription Factor Family AT1G73760 40.333 3.83e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00135 - - qsa:O6P43_005125 494.582