LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte7g00098	ATGGCATCTGGACTGAAGGAGGACGAGAAGAATGAAAGACTAATACGGGGCCTTCTTAAGCTATCTGAGAATCGTAGATGTATCAATTGTAATAGCTTGGGACCGCAATATGTTTGCACAAATTTCTGGACATTCATTTGCACAAACTGTAGTGGAATCCACCGGGAATTCACACACCGGGTAAAATCAGTTTCAATGGCTAAATTTACCTCACAAGAAGTTATTGCTCTTCAAGAAGGTGGGAATCAGCGTGCAAAAGAAATATATTTTAAAGAATGGGATTCACAACGCCATTCTCTTCCTGATACTAGTAATGTTGACAGGCTTCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATATACTGGTGAAAGGAACTATGATAAACCACCAAGAGGAAAGATGGGTGATAAGGAAGGTTCCCGAAGCCCGCAGTATGATGAAACAAGGTCTAGTTCTGGTGGAAGAAGTCCTGGGTATGAACAGGAGAATAGACAGTATGGTGAGAACAAAAAAAGTCCAAGCCGCCCTCAGATAGTGAATGATTGGCGCCGTGATGATAGATCTGGTAATGGAAGGAGATCTGAAGATCGTATATCATCTGATGGTGATTACAAGTCAGAAGGGCAATCTCCTGAGTGGCCTAAAGATCCGGATTCTTCAAGCCCCCCTGTAGTACGACCTGTAAGAGATATTTTAGGGGATAATATCATAGCTCTACGTATTAGTGAACCTCCTAAAGCAAATAGTGGAAGGATTGGTGATAGCTCCACACAGACACAGAGAACTGCATCATCCAGTAGTTTGGGTTCCGCAAATGGGAATCCAGCAGATTTCAAAGAGAGCACCGAAAGCCTTATCGACTTTGATGCACGCCCTGAACCTCCTGTGCTTGCCGTTGTTTCTCAAGCACAACAAAGTGCTGTGTCCTATCCTGTTACAGAGCCAGCAAAAGCTGCTAATGACAATAACTGGGCCTCTTTTGATATTGCGCCTGTGCCAAACGCACCTCAAGGTCCTTCAAATGCTAATACACTAGATTTGTTACTTTCTGAACTCTCATTTCCATCAGCTGGGAATGCCCCAGTGTCGTCCATCACTTCCAATGCTGGTTCTGTTGCATTGGTTGCACGAGCTTCTAATAATCAGGTTGTCTCTAATCCAGTACCACAGACAACTTCTGGTGTTGCTACTCAATCTCCTGCTCCAGAAGGCAAATCAAGTTGTAGAAAAGAACTTCCAGAGGATCTTTTTACCTCTTCATTTGCGCCCTTTCCTCCGTCAGTTCCAGGATGGCAACTGGGTCCACCTTATCGCATGGCTGTCCCTATGCAGTATAATACTTTCGTGTCTGCACCAGATGCTGTGCAATCATCAAAATCTGCAAATCCATTTGATGTCAGTGTTGAAACTCACTCTGTTCAGGTCCCAACGTTTCCTTCAATGTCATCTTTACAAGGTGCTTTACCAACTGTATTACCTCCAAGCTTGATCCACTCGGCAACTCCATATCCTGCTTGGCCTGCTCAACCAGCACCCTACGGTTTTGCACTGCCTCCTCAAGTGCCATCTCATCCATCGGCAATGGCACCTACTAACGTGTCACTTGCTGGATATCAAGGGGTAGGTGTTCATGGCACGGAGGGTGCTGCATTTGGCCCCTCAAATCCAGATCAGCAGCTGGCGAGTGGGATACATGCACCTGCTGCTCCAAGTCCCTTCTCTCCCGCAGGAGGGAACCCATTTGGATGA	1755	0.4541	MASGLKEDEKNERLIRGLLKLSENRRCINCNSLGPQYVCTNFWTFICTNCSGIHREFTHRVKSVSMAKFTSQEVIALQEGGNQRAKEIYFKEWDSQRHSLPDTSNVDRLRDFIKHVYVDRRYTGERNYDKPPRGKMGDKEGSRSPQYDETRSSSGGRSPGYEQENRQYGENKKSPSRPQIVNDWRRDDRSGNGRRSEDRISSDGDYKSEGQSPEWPKDPDSSSPPVVRPVRDILGDNIIALRISEPPKANSGRIGDSSTQTQRTASSSSLGSANGNPADFKESTESLIDFDARPEPPVLAVVSQAQQSAVSYPVTEPAKAANDNNWASFDIAPVPNAPQGPSNANTLDLLLSELSFPSAGNAPVSSITSNAGSVALVARASNNQVVSNPVPQTTSGVATQSPAPEGKSSCRKELPEDLFTSSFAPFPPSVPGWQLGPPYRMAVPMQYNTFVSAPDAVQSSKSANPFDVSVETHSVQVPTFPSMSSLQGALPTVLPPSLIHSATPYPAWPAQPAPYGFALPPQVPSHPSAMAPTNVSLAGYQGVGVHGTEGAAFGPSNPDQQLASGIHAPAAPSPFSPAGGNPFG*	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte7g00098	584	Pfam	Putative GTPase activating protein for Arf	14	123	IPR001164	GO:0005096
	Pte7g00098	584	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Pte7g00098	584	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Pte7g00098	584	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Pte7g00098	584	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	386	406	-	-
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	123	286	-	-
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	179	214	-	-
	Pte7g00098	584	Gene3D	Arf GTPase activating protein	2	131	IPR038508	-
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	251	281	-	-
	Pte7g00098	584	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Pte7g00098	584	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	147	165	-	-
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	123	146	-	-
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	386	410	-	-
	Pte7g00098	584	CDD	ArfGap_AGFG	12	122	-	-
	Pte7g00098	584	PANTHER	ARFGAP/RECO-RELATED	381	584	IPR044820	GO:0005096
	Pte7g00098	584	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Pte7g00098	584	MobiDBLite	consensus disorder prediction	550	584	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte7g00098	Pte-Chr7	1104657	1111964	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte7g00098	2	117	C2H2 Transcription Factor Family	AT4G05330	34.646	1.48e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte7g00098	-		-	qsa:O6P43_004048	566.229