Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00040 ATGGAGAAAATCTGGCTTCTGAGTTCTATCTGTCTTCACATCATTGTTGCAGCAGAAGCTGACATGGGTCTTGGGGGCAGTGTTGGCCTTGGTGTAGGCATAGGCAATGCAGTTGGCGGTGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTTGGATAGGAAGTGGAGGAATCAACGGTCCAACTCCATCAGGGCCTTCACCTTCAAACCCCAGTAGAGCTTACACTGCTTTGCAGGCTTGGAAATCTGCAATCGCAGATGATCCTCTAAAGATTTTAGACAGTTGGGTTGGTCCTAATGTCTGCTCTTACAAAGGAATTTTCTGTGCCGCTCCTCAAGATGAAACGGCTGCATCATCCGATACTGACCCTGTGATTGTCGGTATAGATCTCAACCATGCAAATCTTCAAGGCGCTCTTGTGAAAGAGTTGTCTCTGTTGAATGAAATGTCACTACTTCACCTCAATAGCAACAGATTTTCGGGCACAGTGCCCGACACCTTCAGAGACCTCTCATCTTTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTTCAGCTACACTATATCTTCCCAATTTGGTTTACTTAGACCTTAGGTTCAACAGATTCTCAGGCCCCCTTCCTGACGATCTCTTCAACCAAAAGCTAGATGCCATATTTCTCAACAACAATCAGTTTGAAGGGGAAATCCCCCAGAATTTGGGAAACTCTCCCGCGTCTGTCATAAACTTAGCAAATAACAAGCTCAGTGGAAACATCCCACTTAGTCTTGGATTCACGGGTTCTAAACTAAAGGAGATACTGTTCCTCAACAATCAGTTAACGGGTTGCATTCCTGAGGGATTAGGGCTCTTTACTGACATTCAAGTTCTGGATGTAAGCTATAATACACTAATGGGCCACTTGCCAGATACATTATCCTGTTTGCAAGGCATCGAAGTCTTGAATTTAGCACACAATAAGCTTTCTGGGGATGTGCCAGACCTGATCTGTTCTTTGAGTAGCCTGGTGAATCTCACAGTTTCCTACAACTTCTTTTCTGGGTTCAGCCAAGAATGTGCTAAGCTGTTCAGGAATATAGGCTTTGATTTCTCGGCAAACTGCATCCCTGGTAGGGACATGCAGAGACCTCAACCGGAATGCTCTGTGATCCCTGGAGGTGGACTGAGCTGTCTAAGAATTCCAGCACAGCCTCTTGTCTGTGGCTCAATTTCCCTGTCATCTAAGCAAACTCATCCCAGTTCATCATCTCCATGA 1269 0.461 MEKIWLLSSICLHIIVAAEADMGLGGSVGLGVGIGNAVGGGGGGGGGGGGWIGSGGINGPTPSGPSPSNPSRAYTALQAWKSAIADDPLKILDSWVGPNVCSYKGIFCAAPQDETAASSDTDPVIVGIDLNHANLQGALVKELSLLNEMSLLHLNSNRFSGTVPDTFRDLSSLEELDLSNNQLSGPFPSATLYLPNLVYLDLRFNRFSGPLPDDLFNQKLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKLSGNIPLSLGFTGSKLKEILFLNNQLTGCIPEGLGLFTDIQVLDVSYNTLMGHLPDTLSCLQGIEVLNLAHNKLSGDVPDLICSLSSLVNLTVSYNFFSGFSQECAKLFRNIGFDFSANCIPGRDMQRPQPECSVIPGGGLSCLRIPAQPLVCGSISLSSKQTHPSSSSP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00040 422 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 67 415 - -
Pte7g00040 422 SUPERFAMILY L domain-like 73 372 - -
Pte7g00040 422 Pfam Leucine rich repeat N-terminal domain 74 108 IPR013210 -
Pte7g00040 422 Pfam Leucine rich repeat 151 207 IPR001611 GO:0005515
Pte7g00040 422 Gene3D Ribonuclease Inhibitor 242 365 IPR032675 -
Pte7g00040 422 SMART LRR_typ_2 194 218 IPR003591 -
Pte7g00040 422 SMART LRR_typ_2 313 337 IPR003591 -
Pte7g00040 422 SMART LRR_typ_2 170 193 IPR003591 -
Pte7g00040 422 SMART LRR_typ_2 146 169 IPR003591 -
Pte7g00040 422 Gene3D Ribonuclease Inhibitor 72 241 IPR032675 -
Pte7g00040 422 MobiDBLite consensus disorder prediction 51 72 - -
Pte7g00040 422 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 263 353 - -
Pte7g00040 422 PRINTS Leucine-rich repeat signature 173 186 - -
Pte7g00040 422 PRINTS Leucine-rich repeat signature 313 326 - -
Pte7g00040 422 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
Pte7g00040 422 FunFam Leucine-rich repeat extensin-like protein 1 74 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00040 Pte-Chr7 605228 607623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte7g00040 73 402 Leucine-rich Repeat extension Gene Families AT3G24480 47.321 1.45e-100 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte7g00040 - - qsu:112008913 556.599