Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02308 ATGGAGAAGAAACTTGAAGTAGAAGATAGTAATGGTACTACTAGTGATGATTTTATCGGTGACTCAGAGGATGATGACCCCTCAGATTCTGAAGATATTGAGAAGATGCATCTTGAGGAACCTCTGACTGAAGAAGAGATAGAGGACATAATAGCTGATCTATTAGAAGCTGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTCGAAGAGGAGTCTCTTGCCAAAGTTGAAAAAGATGTTAGAGAAGAGTTGGCTGAAACTCTTCATGGGGATGATTTGGAAGCAGCCGTTGCAGCTGAAATGACCACTTATAAAGAGGAGTGGGAAGCTGTACTTGATGATCTTGAAACTGAGAGTGCTAACTTGCTGGAGCAACTTGATGGGGCTGGGGTTGATCTTCCCAGCCTTTTCAAATGGATCGAAGGACAGGTTCCTAGCTGTTGTTCCACTGAAGCATGGAAGAAAAGAAATCACTGGGTAGGATGTCAGATGACAGGTGAAATTGCAGCGTCCGTTGCTTGTGCTGAAAACTTTTTAAAGACAGAGAGGCCTGTAAGAAGGCGACATGGTAAACTATTGGAGGAAGGGGCTAGTGGGTTTCTGCAGAAAAAAATTATTTCTAGTGACATAACCAATGCAACACCTGGAAGTAAAGAAGTTGATTGGGGATCACTGACAAGAATTTTTGCTGATGGTGAATACAATGATGATGCTTCTTTTGGAAGCAGGAACTGGGCTTCTGTTTATTTAGCCAGCACTCCACAGCAGGCTGCAGAGATGGGACTAAAATTCCCTGGAGTAGATGAGGTGGAGGAGATTGATGATATTTATGGAAATTCAAGTGATCCATTCATTGCAGCAGCTATTGCCAATGAAATGGTACCAGACCTTTCTGAAGAACAGAAGAAAAATTTTAGAAAGGTCAAAGAGGAAGATGATGCAAATTTTGATAAGAAGCTTTGTAATAATTTAAAACGAAGGAGGTATAGAAAGAGAACAAAGCAGAGTAAATCCAATAAAGAAGTTGGACCAGGAGATGAGGTAGTTGGATGCAATGATAAGTCTTCATCTTCTATTGTTTCTAATGCCATAATAAGTGAAAGAATTAGAAAGGAAGAGATTGGCGATGTATTCAACAATGAGCAGGAGATCACATGTCCAGATTCTAAGAGTGAAATAAATGTTACACTCAACAATGGTGATCTAGATGAGGACGGATCATTAGCTGTTGCCTCTGAAAACATTGGCTACAAGCATCCTCGTGATGGAGAGGTGCTAGATGGTGATAATAAGAGGTGTCGAACTATTTTTGCAGAAAGTGACAACCAGACTGATGCAGTGAAAGATAGTCCAGAGTTAGAAAGAGTTATGGTGTCTGGTGATCTAACGGTTTCTATTTCTGGTAGCGATTCAGATAGTTCAGGGTCAGATATTTATGCTGGAGTCAGTTCAAAGCGAAAGCGAAAAAAGAAGATAAGAAGGATCCTTGATGATGCTGAATTGGGCGAAGAAACAAAAAGAAAGATAGCTATTGAAAAGGAGCGCCAGGAGCGTCTGAAGTCATTGAAAGTACAGTTTTCTGTTGCATCTATGATGGCAAGCTCTGCTAGCTCTGACGGGAATTTTCCTGAAGGAGCAAGTGTTGAAGTGCTTGGTGATGCTTTGACAGGTTATATAGTGAACGTTGTGAGGGAGAAAAGTGAGCAAGCTGTCAGAATACCTCCTAGCATCTCCTCCAAACTGAAAGTCCATCAGGTTGCTGGGATAAGGTTTATGTGGGAAAACATAGTGCAGTCAATCAGAAAAGTGAAATCTGGGGATAAAGGCCTTGGTTGCATTTTAGCTCATACTATGGGCCTCGGGAAAACTTTTCAGGTGATTGCTTTTCTGTATACAGCATTGAGAAGTATTGACTTGGGTTTAAGAACAGCACTCATCGTCACACCTGTGAATGTCCTGCATAATTGGCGGCAAGAGTTCAACAAGTGGAGACCTTCAGAATTAAAGCCTCTAAAAGTCTTCATGCTGGAAGATGTTTCAAGAGAAAGGAGAGCTGAGCTGCTTGCCAAGTGGAGAGCTAAAGGTGGAGTCTTTTTGATAGGATATACTGCTTTTCGAAACTTGTCCCTTGGAAAGAATGTGAAAGACCGAAACGTGGCGAAAGAGATTTCTTGTTCTTTGCAGGACGGACCAGATTTACTTGTTTGTGATGAGGCCCATATGATCAAGAACACAATGGCTGATGTAACTCAGGCATTGAAACAAGTTAAATGCCAGAGAAGGATAGCACTAACGGGTTCACCTCTTCAAAACAATCTTATGGAATATTACTGTATGGTTGATTTTGTACGGGAAGGCTTTCTTGGGAGCAGCCATGAATTTAGGAATCGCTTCCAAAATCCTATCCAGAATGGCCAACATACTAATTGTACACTTGAAGACGTGAAAATTATGAACCAAAGGTCACACATTCTGTATGAACAGCTGAAAGGATTTGTCCAACGGATGGATATGAATGTAGTGAAGAAGGATTTGCCACCAAAAACAGTCTTTGTAATAGCTGTGAAGCTTTCTCCATTACAGAGGAAATTATATAAGAGATTCCTGGATGTGCATGGATTTACAAGTGGCGGAGCTTGTAATGAAAATATTAGGAAAAGAAGTTTTTTTGCTGGTTATCAGGCCTTGGCTCAGATATGGAATCACCCTGGGATCTTGCAATTGGCAAAAGAAGACAGAGTTTATGCAAGACGTGAGGATGCTGTTGAGAACTTTCTCGTGGATGATAGCTCAAGCGATGAAAATACCGACTATAATACAATGGGAGAGAGGCCCACATCTGCAAATGATCCTGTTCAAAAGAAAGAGGATGATGGCTTTTTGTTAAAGGGTTGGTGGAATGATCTTCTTCACGAAAATAATTGTAAAGAGCTTGATTACAGTGGCAAAATGGTTCTGTTGCTAGACATTCTCAATTCAAGTTCTTTGATGGGGGACAAGGTGTTAGTTTTCAGCCAGAGCATTCCAACACTAGATCTAATAGAACACTATCTTTCAAGGTTATCTCGACGAGGCAAAAGTGGGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGCTGGATGGAAGGACTGAAAGCTCTGAAAGACAAAGGATTGTTGAGAGATTTAATGAGCCCCTAAATAAAAGAGTGAAGTGCACTCTGATATCAACCAGAGCTGGTTCTCTGGGTATTAATCTTCATGCTGCTAATCGTGTTGTTATAGTTGATGGTTCCTGGAACCCGACATACGATCTTCAAGCTATTTATCGTGCATGGAGATATGGCCAGAAGAAACCAGTTTTCGCTTACAGGATGATGGCACATGGAACGATGGAAGAAAAGATCTATAAGCGTCAGGTTACAAAGGAAGGCCTTGCTGCTAGAGTTGTTGATAGACAACAGATAAATAGGACAATTTCTAAGGAAGAGATGCTACACCTCTTCGAATTTGGAGATGAAGAGAGTCCTGATTCTCTAAGTGAGCTGGGAATTGAGAATAGACATAAGGAGCAAATTGGTATGAGCTCAGCTGGGCAAATTAAGCAGAATGGAAGCAGCTCTGACAAGTTGATGGAAAATTTACTGAGCAAGCATTATCCCAGGTGGATTGCCAATTATCACGAGCACGAGACTCTTCTGCAAGAGAATGAAGAGGAGAAGCTATCCAAGGAGGAGCAAGACATGGCTTGGGAAGTATACAGGAGAAGCTTAGAATGGGAAGAAGTGCAACGAGTTCCTCTTAACAACTCTCAATCTGAGAAAACGCCCGTTGTTGCCGTTTCCTCTCAACCAGAAAGTTGCAGCCGCAGACTTCCAAGGGTGAGGAATTGCTTGGTTCTCCGAAAATGTACCAACCTTTCTCACTTGTTAACTCTTAGAAGTCAGGGAACGAAGCGTGGTTGCAGCACTGTGTGCGGGGAATGTGCTTTGGAGATAAGGTGGGAAGATCTGAATGGGGATGGCAAACTACCAAGGTGA 4020 0.4179 MEKKLEVEDSNGTTSDDFIGDSEDDDPSDSEDIEKMHLEEPLTEEEIEDIIADLLEAESKAAEAQEALEEESLAKVEKDVREELAETLHGDDLEAAVAAEMTTYKEEWEAVLDDLETESANLLEQLDGAGVDLPSLFKWIEGQVPSCCSTEAWKKRNHWVGCQMTGEIAASVACAENFLKTERPVRRRHGKLLEEGASGFLQKKIISSDITNATPGSKEVDWGSLTRIFADGEYNDDASFGSRNWASVYLASTPQQAAEMGLKFPGVDEVEEIDDIYGNSSDPFIAAAIANEMVPDLSEEQKKNFRKVKEEDDANFDKKLCNNLKRRRYRKRTKQSKSNKEVGPGDEVVGCNDKSSSSIVSNAIISERIRKEEIGDVFNNEQEITCPDSKSEINVTLNNGDLDEDGSLAVASENIGYKHPRDGEVLDGDNKRCRTIFAESDNQTDAVKDSPELERVMVSGDLTVSISGSDSDSSGSDIYAGVSSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLKSLKVQFSVASMMASSASSDGNFPEGASVEVLGDALTGYIVNVVREKSEQAVRIPPSISSKLKVHQVAGIRFMWENIVQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTALRSIDLGLRTALIVTPVNVLHNWRQEFNKWRPSELKPLKVFMLEDVSRERRAELLAKWRAKGGVFLIGYTAFRNLSLGKNVKDRNVAKEISCSLQDGPDLLVCDEAHMIKNTMADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIQNGQHTNCTLEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLDVHGFTSGGACNENIRKRSFFAGYQALAQIWNHPGILQLAKEDRVYARREDAVENFLVDDSSSDENTDYNTMGERPTSANDPVQKKEDDGFLLKGWWNDLLHENNCKELDYSGKMVLLLDILNSSSLMGDKVLVFSQSIPTLDLIEHYLSRLSRRGKSGKFWKKGKDWYRLDGRTESSERQRIVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRMMAHGTMEEKIYKRQVTKEGLAARVVDRQQINRTISKEEMLHLFEFGDEESPDSLSELGIENRHKEQIGMSSAGQIKQNGSSSDKLMENLLSKHYPRWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRRSLEWEEVQRVPLNNSQSEKTPVVAVSSQPESCSRRLPRVRNCLVLRKCTNLSHLLTLRSQGTKRGCSTVCGECALEIRWEDLNGDGKLPR* 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02308 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1179 IPR027417 -
Pte6g02308 1339 MobiDBLite consensus disorder prediction 932 947 - -
Pte6g02308 1339 Gene3D - 554 835 IPR038718 -
Pte6g02308 1339 Pfam SNF2-related domain 604 905 IPR000330 GO:0005524|GO:0140658
Pte6g02308 1339 Coils Coil 47 74 - -
Pte6g02308 1339 CDD SF2_C_SNF 977 1120 - -
Pte6g02308 1339 SMART ultradead3 577 798 IPR014001 -
Pte6g02308 1339 MobiDBLite consensus disorder prediction 1 44 - -
Pte6g02308 1339 PANTHER RAD54-LIKE 14 1332 IPR044574 GO:0016887
Pte6g02308 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 835 IPR027417 -
Pte6g02308 1339 SMART helicmild6 1012 1109 IPR001650 -
Pte6g02308 1339 Coils Coil 98 132 - -
Pte6g02308 1339 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 603 786 IPR014001 -
Pte6g02308 1339 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 983 1157 IPR001650 -
Pte6g02308 1339 MobiDBLite consensus disorder prediction 932 953 - -
Pte6g02308 1339 MobiDBLite consensus disorder prediction 329 350 - -
Pte6g02308 1339 Gene3D - 846 1200 IPR027417 -
Pte6g02308 1339 Coils Coil 1220 1240 - -
Pte6g02308 1339 Pfam Helicase conserved C-terminal domain 984 1109 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02308 Pte-Chr6 38598143 38610951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02308 611 1162 RAD5 or RAD16-like Gene Family AT5G43530 24.647 1.17e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte6g02308 SNF2_N 1.7e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02308 K10779 - sind:105161157 1593.94