LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g02295	ATGGCTCCATCGAGGAAGCCGGGAAGCGGGAATAAGCGCTTTTCTGCTTTAAATGAGGTTTCACCAGAAAAAGAAGCAAGCTATTCAAATAGAAATAAGCCGCGGAAAAAGAAATTGTCTGATAAATTAGGATCTCAATGGAGCAAAGAGGAACTAGAGCAATTCTATGAAGCGTACAGGAAACATGGTAAAGACTGGAAGAAGGTGGCTTCTGCAGTGCATAACAGATCACCTGAAATGGTGGAAGCTCTTTACATTATGAACCGGGCATACTTATCTCTACCAGAGGGAACAGCCTCAGTTGTTGGCCTCATAGCAATGATGACTGACCACTATAATGTCCTGGAAGGAAGTGACAGTGAAAGAGAGAGCAATGAGGCATCAGTATCTCAGAGGCCCCAGAAGCGCAAGCGTGGTAAAGTTCAGATTACTCCCCGAAAAGGCATCTCCCAATCTCGATCAGTTGCATCTAATGAAGGTTGCTTATATTTACTCAAAAGGGGGAAATTTGATGATGGGCAGCCTCGTGTAGTTGGTAAAAGAACACCTAGGTTCCCGGTTTGCAAAAAGGATGATAGTGAAAATTTTGTCTTGCCAAATAGAAGAGGGAAGAAACTGGATGTTGACTCTAGCAATGATGACGATGAACATGTAGCAGTTCTAGCTTTAACGGAGGGCTTCAGAAGCGTGTCTCCTCAAGTTTCTCAACCTAGTAGAAAGACAATGAATCTCAAATCCTCTCCAGCTCAGAGCTGGGAAAGAATGACTCGCGGTACTTCTGTTGAAGATCGTTCGGAAGGCTTTATAGAAAGTAGGGGAGCTGAAAATGGAGAATATGCTACAGACATAAATTCATTTATGTACATGGAAGGTGTTGGCACAGTAGAAGTTCATCGGAAGGGTAAGAGATTTTACGGGAAGAATCAGAAGGCTGAGGAATATGGAAACCATCAACTTGATGATGGTGGAGAAGCACGCAGTGGCACTGAAGAAGAGTTTAACCATAATGCTTCTAGGGAAAAGATTCGTAATGAGACTAACAAAGGAAAATGTGGAAAGTTTTCTCCACACAGTCAGAGGAAAGGAAGCAGGAAACTTTGTTTTGTAGGTGAGCCTGTCGTGTCATAA	1128	0.43	MAPSRKPGSGNKRFSALNEVSPEKEASYSNRNKPRKKKLSDKLGSQWSKEELEQFYEAYRKHGKDWKKVASAVHNRSPEMVEALYIMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSERESNEASVSQRPQKRKRGKVQITPRKGISQSRSVASNEGCLYLLKRGKFDDGQPRVVGKRTPRFPVCKKDDSENFVLPNRRGKKLDVDSSNDDDEHVAVLALTEGFRSVSPQVSQPSRKTMNLKSSPAQSWERMTRGTSVEDRSEGFIESRGAENGEYATDINSFMYMEGVGTVEVHRKGKRFYGKNQKAEEYGNHQLDDGGEARSGTEEEFNHNASREKIRNETNKGKCGKFSPHSQRKGSRKLCFVGEPVVS*	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g02295	375	Pfam	Myb-like DNA-binding domain	45	81	IPR001005	-
	Pte6g02295	375	ProSiteProfiles	SANT domain profile.	42	79	IPR017884	-
	Pte6g02295	375	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	39	81	IPR017930	-
	Pte6g02295	375	PANTHER	LIN-9	1	341	IPR010561	GO:0006351\|GO:0017053
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	1	44	-	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	231	266	-	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	117	133	-	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	231	256	-	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	26	44	-	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	308	363	-	-
	Pte6g02295	375	SMART	sant	43	91	IPR001005	-
	Pte6g02295	375	Gene3D	-	11	101	-	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	117	152	-	-
	Pte6g02295	375	SUPERFAMILY	Homeodomain-like	40	90	IPR009057	-
	Pte6g02295	375	CDD	SANT	47	81	IPR001005	-
	Pte6g02295	375	ProSiteProfiles	Myb-like domain profile.	45	85	IPR001005	-
	Pte6g02295	375	MobiDBLite	consensus disorder prediction	308	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g02295	Pte-Chr6	38509950	38517998	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pte6g02295		Myb_DNA-binding	4e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g02295	-		-	qsa:O6P43_011108	439.113