Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02252 ATGATTCATTTCGAGGAGACAGAGTTGAGGCTTGGTTTGCCTGGTGGGACTTTTGGAAATGATCATGCGGAGGCAGAAGTTAAGAGCACTACTGCTTTTGCTGCCAGTGCTTCTTCCATGGTTGCTATCGGGAAGAGAGGGTTTTCTGAGACTGTTGATTTGAAGCTTAATCTTTCCTCCTCCATAGAACCAGCCAATTCATGTGATGTTGCTGTAGACAAGACTAAAGACAAGGCTGCTTGTGCTTCACGGCCCAATGATTCTACGAAACCACCAGCAAAGGCACAAGTTGTGGGTTGGCCACCCGTGCGATCATTTCGAAAGAATTTTGCGGCTGTGCAGAAATCAAATACAGATCGTGAAGGCGAGAAAAGCAGCTGCCATGCTGCCTTCATTAAGGTAAGCATGGATGGTGCACCTTATTTACGTAAAGTGGATTTGAAGTTGTACAAGAGCTACCGAGAACTCTCTGATGCCCTTGCCAAAATGTTCAGCTCCTTCACCATTGGTCATTGCGGTTCACAAGGGATGAAGGACTTTATGAACGAGAGCAAGTTGATTGATCTTTTAAATGGTTCTGACTATGTCCCAACATATGAAGACAAGGATGGAGACTGGATGCTTGTTGGTGATGTGCCATGGGAGATGTTTGTTAATTGCTGCAAGCGTTTGCGAATCATGAAAGGATCTGAAGCAATTGGACTTGCTCCAAGAGCAGTGGAGAAATGCAAAAATAGAAGTTGA 744 0.4489 MIHFEETELRLGLPGGTFGNDHAEAEVKSTTAFAASASSMVAIGKRGFSETVDLKLNLSSSIEPANSCDVAVDKTKDKAACASRPNDSTKPPAKAQVVGWPPVRSFRKNFAAVQKSNTDREGEKSSCHAAFIKVSMDGAPYLRKVDLKLYKSYRELSDALAKMFSSFTIGHCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVNCCKRLRIMKGSEAIGLAPRAVEKCKNRS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02252 247 ProSiteProfiles PB1 domain profile. 129 229 IPR000270 GO:0005515
Pte6g02252 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 234 IPR003311 GO:0005634|GO:0006355
Pte6g02252 247 FunFam Auxin-responsive protein 124 239 - -
Pte6g02252 247 Pfam AUX/IAA family 6 238 IPR033389 -
Pte6g02252 247 SUPERFAMILY CAD & PB1 domains 129 228 - -
Pte6g02252 247 Gene3D - 123 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02252 Pte-Chr6 38190274 38192250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02252 121 237 B3 DNA Binding Superfamily AT4G23980 32.479 4.88e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte6g02252 AUX_IAA 5.1e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02252 K14484 - rcu:8269330 347.051