Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02240 ATGGTGGTGATCCGAAATAATAGAAGGGAGGAGAGTTTGCTCAAGAAGAGACGTGAAGGACTTCAAGCTCAGCAGATGCCTCCTACAATCCAGTCTACTGGACTATACAAGAAGTTGGAGCACCTAACATCCATGGTTGCTGGTGTTTGGTCAGAGGATGTTAACCTGCAGCTTGAGGCAACCACTCAGTTCAGAAAACTGCTTCAATTGTTTGAGGCTGCATGGGCATTTACAACTATAGCTTCTGGAACATCTGAACAAACCAAAGTGGTGATTGATCATGGAGCTGTCCCAATCTTCGTCACACTTCTTGGTTCTCGGAGTGATGATGTCCTCGAACAGCACAACTTAATGAAAATGCCAAGCTTTCTATGCTCTGAAATGCGATATGGAAACTTTCTAATTTTTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGGCATCCATCACTTCCTGTTCTTGTTCCCGCTCTTCGCACAGTAGGAAATATAGTCACCGGAGATGATTTGCAGACTCAGATTATTATTGAACATCAGGCCCTGCTCTGCCTTCTGAACTTGTTGACCGACAATTACAAAAAGAGCATCAAGAAGGAAGCCTGTTGGACTATTTCAAATATAACAGCTGAATTTCGTAAAAGTATAGAATATGAAAATATTGGTATCTCAAATTTGTGGTATGTATCTGTTTCCTACTCATGTTTGATAATCATTGATTATCGCAAGTTTGCAGTTTGGTATCACTTTCAAACTGCCTCACATTTCCAGTCAAATACTCTGGTGCAAATGTCACATCCAATCTTGGACAAACTATATGTCAACTGGGAAATGATAATTAAGCCCTCGTTTGCCCATGCGGCGATGAATAATTTTGAAAAGTCTGTACTGTTTATGTTTACAGTGGATTTGAAGGAAAAGGCATTGCTCTCCAAAGAAATGATCAATGATAACCAAAAGGCTTGTACGGATTGCAAAACAACAAAGACACCATTATGGAGGGTAGGGCCAGCTGGGCCAAAGACACTGTGTAATGCATGCGGGATCAGATACCGGAAGAAAAAGGTTCCCGTGGTGAAGGGACAGGAGAAGAAGAGAGACAAGGCACAAACTCAAAGCCATGGTTCTGTGCCTTCATCCACCACCATTACCTCCATCGCGGGAACTAGTGCGGCCATCACAACTGGCAAGGCTTCTTGCGGTGGTGGTTACAAGAATTTAAATGTTTCGTTGAAGATACAGTTGACGGCTCTGGGTGACGAGTTTTTGTTTCAAAGGTCACCGCCGATAGTGAAGAAACAGAGGTGTAATAGGAGGAGGAAGAAATTGGGGGAGGAGGAACAAGCTGCTTTTTGTTTAATGGCCTTGTCTTGTGGCTCTGTCTTCGCTTAA 1389 0.432 MVVIRNNRREESLLKKRREGLQAQQMPPTIQSTGLYKKLEHLTSMVAGVWSEDVNLQLEATTQFRKLLQLFEAAWAFTTIASGTSEQTKVVIDHGAVPIFVTLLGSRSDDVLEQHNLMKMPSFLCSEMRYGNFLIFVGASHSLLLIRHPSLPVLVPALRTVGNIVTGDDLQTQIIIEHQALLCLLNLLTDNYKKSIKKEACWTISNITAEFRKSIEYENIGISNLWYVSVSYSCLIIIDYRKFAVWYHFQTASHFQSNTLVQMSHPILDKLYVNWEMIIKPSFAHAAMNNFEKSVLFMFTVDLKEKALLSKEMINDNQKACTDCKTTKTPLWRVGPAGPKTLCNACGIRYRKKKVPVVKGQEKKRDKAQTQSHGSVPSSTTITSIAGTSAAITTGKASCGGGYKNLNVSLKIQLTALGDEFLFQRSPPIVKKQRCNRRRKKLGEEEQAAFCLMALSCGSVFA* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02240 462 Pfam GATA zinc finger 321 355 IPR000679 GO:0006355|GO:0043565
Pte6g02240 462 SUPERFAMILY ARM repeat 2 214 IPR016024 -
Pte6g02240 462 SMART arm_5 84 166 IPR000225 GO:0005515
Pte6g02240 462 SMART arm_5 168 209 IPR000225 GO:0005515
Pte6g02240 462 Gene3D - 136 225 IPR011989 -
Pte6g02240 462 CDD ZnF_GATA 320 367 IPR000679 GO:0006355|GO:0043565
Pte6g02240 462 MobiDBLite consensus disorder prediction 358 380 - -
Pte6g02240 462 Gene3D - 316 376 IPR013088 GO:0006355|GO:0008270
Pte6g02240 462 Pfam Armadillo/beta-catenin-like repeat 84 114 IPR000225 GO:0005515
Pte6g02240 462 Pfam Armadillo/beta-catenin-like repeat 169 209 IPR000225 GO:0005515
Pte6g02240 462 PANTHER IMPORTIN ALPHA 145 250 - -
Pte6g02240 462 SMART GATA_3 315 366 IPR000679 GO:0006355|GO:0043565
Pte6g02240 462 Pfam Importin beta binding domain 1 62 IPR002652 GO:0006606|GO:0061608
Pte6g02240 462 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 318 363 - -
Pte6g02240 462 Gene3D - 31 114 IPR011989 -
Pte6g02240 462 ProSiteProfiles GATA-type zinc finger domain profile. 315 351 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02240 Pte-Chr6 38103106 38108896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02240 314 463 C2C2-Gata Transcription Factor Family AT5G49300 42.667 5.47e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte6g02240 IBB 3e-10 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02240 K15042 - qsa:O6P43_011056 177.178