LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g02238	ATGACCTTTTCAACTATGAGAGAGAACAGAGGTTTTTGCCAAATAAAGGGCAATTTTGAATTGGCAATTTATCGTGGGCAGATTTCAAAAAATTGCAAAAATACACTGGAACCCCACGTTAAATCTAAACGCGTTCATCACCAGTCAGCAGTCACTACGCGTTTTCAAAAAACCGTTGATAAGTATCGGTTGTATTATTTGTTGTCGGGATTCAAGTCTGTGTTGGCTTTCACAAATTACATTTGCTTGATGGTACAGAAGAGGCCATTTCCTGCTGAGGATGGAAGGGGTGGTACGGATGGTTCTGGTAGTAACGGGGAAAAGCTTCCATTTCAACCGTTGCAACGAAGACGTACGCTTGAGAGCCAGGGGAGCAGGAATAATGAAAACTTTTTAGAAGCGTTGACGCAGCGGCTGAACGAATTCGTGGCGAAGGTGAGAGAGGAGGTTCAGCCTTTGGTAACGTTACTCGAGGAGTTAAAAAGTTTTAGAGATTTTGTAAGACCAACACCTATCCTTCAGAGTCGTGCTGAAACATCAGGAGTTAAAAAGTTTCAGTTGCGTTTTCTGAACAAAGTCCCCAAGTCCATCTTCACTCAAACTAAGATAGCAGCTAAGGATGGCTCACCCATAAAGGTTGCTCTGTTTGATATTAGATCTGAGTGTGTAGTTGAACATGGTCCCCTGTCATGCCTAAACGTCGACTTAAGTGTTCTGTGTGGTGATTTTGGGTCAAATGATGGTGAATCTATGTGGACGGACCACGAGTTCCTTGCTAGCGTCGTTAGTGCACGGCCTGGTAAAAGGCCGTTACTAGATGGGAATCCCAAAGTTAAATTGGAAGGAGGGATTGGTGAGATTGGCGAGATTGCTTTAACAGACAATTCCAAGTGGATGAAAAATGCAATGTTCAAGCTTGGAGTAATGGCTGTTGGAAACGAGGAAATCCAAGGAGGCATAAGCGATCCTTTCAGAGTGAAAGATCGTCGTGGAGAATCCTATGAGAAGCACTACCCACCATTGTTGGGTGATCCGCTGTGGCGCTTGGAAAAGATAGCAAAAGATGGTCCATATGACCAGCAGCTCTCAGTTGGCGGAATAAGAACTGTGGAAGATTTACTCAGGTTGCATACAATCGATCCATCTGCACTGGATAAGATATTTGAAGGCATTTCGAAGAAGAAGCAAGAGTCAATAATGAGGCATGCCTTGACTTGTGTTGTAGACAACAGCGTCTCATACTTTTATGAAGTACCGGACCCGCCGATAGCACTGTTATTCAATTGCATCTACAAGCTTGTGAAAGTCACATTTGATCATGAACATTTTCTTTCCCAAGAAGATCTTACCTCAGAGCAGAAAGTACGCATCGATAGACTTCAATTATTTTCATACCCATGTAGAGACTTCCGTTATTTTCATAGGCTATTGCTAGACAACTAA	1443	0.4297	MTFSTMRENRGFCQIKGNFELAIYRGQISKNCKNTLEPHVKSKRVHHQSAVTTRFQKTVDKYRLYYLLSGFKSVLAFTNYICLMVQKRPFPAEDGRGGTDGSGSNGEKLPFQPLQRRRTLESQGSRNNENFLEALTQRLNEFVAKVREEVQPLVTLLEELKSFRDFVRPTPILQSRAETSGVKKFQLRFLNKVPKSIFTQTKIAAKDGSPIKVALFDIRSECVVEHGPLSCLNVDLSVLCGDFGSNDGESMWTDHEFLASVVSARPGKRPLLDGNPKVKLEGGIGEIGEIALTDNSKWMKNAMFKLGVMAVGNEEIQGGISDPFRVKDRRGESYEKHYPPLLGDPLWRLEKIAKDGPYDQQLSVGGIRTVEDLLRLHTIDPSALDKIFEGISKKKQESIMRHALTCVVDNSVSYFYEVPDPPIALLFNCIYKLVKVTFDHEHFLSQEDLTSEQKVRIDRLQLFSYPCRDFRYFHRLLLDN*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g02238	480	PANTHER	OS02G0177800 PROTEIN	86	461	IPR012416	GO:0005516
	Pte6g02238	480	MobiDBLite	consensus disorder prediction	93	125	-	-
	Pte6g02238	480	Pfam	Calmodulin binding protein central domain	342	406	IPR046830	-
	Pte6g02238	480	Pfam	Calmodulin binding protein-like N-terminal domain	185	329	IPR046831	-
	Pte6g02238	480	Pfam	Calmodulin binding protein C-terminal domain	414	460	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g02238	Pte-Chr6	38097541	38100793	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g02238	146	439	Calmodulin-binding Proteins	AT5G26920	40.134	1.76e-64	213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g02238	-		-	qsa:O6P43_007443	275.404